Code

Add cell matching support#74

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Merged

alessandrofelder merged 14 commits intobrainglobe:mainbrainglobe/brainglobe-utils:mainfrom matham:matchmatham/brainglobe-utils:matchCopy head branch name to clipboardJun 6, 2024

+985-1

Commits

Commits on May 14, 2024

• Add cell matching methods.

  matham

  committed
  0c58332

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Commits on May 21, 2024

• Move threshold to matching step so we don't include points too far.

  matham

  committed
  ccd70d9

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• We don't need max. We can just set to threshold.

  matham

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  83bb745

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• Pass numba disable in env.

  matham

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  48617f6

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Commits on May 23, 2024

• We need to reset the used cols at each iteration.

  matham

  committed
  1bf364a

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• Add support for pre-extracting zero distance pairs.

  matham

  committed
  a50f4aa

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• Add option to use scipy optimization.

  matham

  committed
  e1ca972

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• Scipy doesn't have callback so don't show progress.

  matham

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Commits on Jun 3, 2024

• Apply suggestions from code review

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  matham

  and

  alessandrofelder

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  041b9da

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• fixture to provide cell data for regression testing

  alessandrofelder

  committed
  f7d1900

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• Merge pull request #1 from brainglobe/fetch-xml-test-data

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  matham

  authored
  4e73c40

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• Remove scipy as an option and fill in scipy as a test.

  matham

  committed
  baea2ad

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Commits on Jun 6, 2024

• Run cov without numba jit and support GH actions pooch cache.

  matham

  committed
  bb0ed47

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• Use proper env variable for pooch cache.

  matham

  committed
  acf0d63

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