Code

Refactor benchmarks' tests#32

Code

Closed

sfmig wants to merge 32 commits intomainbrainglobe/brainglobe-workflows:mainfrom smg/tests-refactor-benchmarksbrainglobe/brainglobe-workflows:smg/tests-refactor-benchmarksCopy head branch name to clipboard

+126-66

Commits

Commits on Dec 8, 2023

• fix benchmarks to run with new workflow struct

  sfmig

  committed
  86967fb

  Copy full SHA for 86967fb

Commits on Dec 11, 2023

• edit asv config to use this branch

  sfmig

  committed
  0df06c4

  Copy full SHA for 0df06c4

• change project name. remove dvcs

  sfmig

  committed
  3eb0ede

  Copy full SHA for 3eb0ede

Commits on Dec 21, 2023

• split tests with and without CLI inputs

  sfmig

  committed
  1603425

  Copy full SHA for 1603425

• pass all parameters to cellfinder_run

  sfmig

  committed
  5ffcbd0

  Copy full SHA for 5ffcbd0

• changed required, optional and internal fields. read_config passes. add method to config class (WIP)

  sfmig

  committed
  023f1a9

  Copy full SHA for 023f1a9

• add signal and background data from local

  sfmig

  committed
  e0502ed

  Copy full SHA for e0502ed

• add missing data config fixtures

  sfmig

  committed
  cbc1bb3

  Copy full SHA for cbc1bb3

• mark GIN download data test as slow

  sfmig

  committed
  8fe1295

  Copy full SHA for 8fe1295

• all tests passing with default config

  sfmig

  committed
  e278593

  Copy full SHA for e278593

• all tests passing with default option

  sfmig

  committed
  d99cb02

  Copy full SHA for d99cb02

• make all paths input strings. move methods to class. make some fixtures dict. simplify other fixtures

  sfmig

  committed
  f83d4e7

  Copy full SHA for f83d4e7

• refactor setup_workflow

  sfmig

  committed
  2f284ba

  Copy full SHA for 2f284ba

• cosmetic changes to fixtures

  sfmig

  committed
  bbc2274

  Copy full SHA for bbc2274

• remove spurious monkeypatched cwd from merge

  sfmig

  committed
  50c537e

  Copy full SHA for 50c537e

• add skips that were removed in merge

  sfmig

  committed
  1cc0de2

  Copy full SHA for 1cc0de2

• move fixtures to code where they are used

  sfmig

  committed
  d5f437c

  Copy full SHA for d5f437c

• bring back default_input_config_cellfinder fixture

  sfmig

  committed
  c1cceea

  Copy full SHA for c1cceea

• finalise adding local config as parameter in test_read_cellfinder_config

  sfmig

  committed
  7a015a9

  Copy full SHA for 7a015a9

• add local config to remaining unit tests

  sfmig

  committed
  6c2cf40

  Copy full SHA for 6c2cf40

• add config for GIN as parameter in unit tests

  sfmig

  committed
  724ef94

  Copy full SHA for 724ef94

• add local config and GIN config to test main

  sfmig

  committed
  3100457

  Copy full SHA for 3100457

• monkeypatched home in integration tests (only works in main)

  sfmig

  committed
  48a8264

  Copy full SHA for 48a8264

• skip tests that use subprocess for now

  sfmig

  committed
  fd3b110

  Copy full SHA for fd3b110

• monkeypatch pooch.retrieve when forcing download

  sfmig

  committed
  2ada202

  Copy full SHA for 2ada202

• make config local fixture copy downloaded GIN data (rather than re-download again)

  sfmig

  committed
  826b55c

  Copy full SHA for 826b55c

• Merge branch 'smg/workflow-tests-caching' into smg/tests-refactor-benchmarks

  sfmig

  committed
  d3ac64c

  Copy full SHA for d3ac64c

• fix benchmarks dir name

  sfmig

  committed
  50e1277

  Copy full SHA for 50e1277

• fix benchmarks to run with workflow changes

  sfmig

  committed
  c8545b5

  Copy full SHA for c8545b5

Commits on Jan 12, 2024

• Merge branch 'main' into smg/tests-refactor-benchmarks

  sfmig

  committed
  90b5120

  Copy full SHA for 90b5120

• add pointer to benchmark in asv monkeypatched config and make simpler tests

  sfmig

  committed
  93bfbd7

  Copy full SHA for 93bfbd7

Commits on Jan 16, 2024

• add machine command to test_asv_run

  sfmig

  committed
  1fcb6f2

  Copy full SHA for 1fcb6f2