BBBC022 SF4 data and code cleaning

broadinstitute · Jan 8, 2024 · bf5eaa0 · bf5eaa0
1 parent ce6a220
commit bf5eaa0
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Showing 2 changed files with 2 additions and 6 deletions.
diff --git a/bbbc022/Chemical-and-phenotypic-spaces.ipynb b/bbbc022/Chemical-and-phenotypic-spaces.ipynb
@@ -10,8 +10,7 @@
     "import matplotlib.pyplot as plt\n",
     "import pandas as pd\n",
     "import seaborn as sb\n",
-    "import umap\n",
-    "from sklearn.decomposition import PCA"
+    "import umap"
    ]
   },
   {
@@ -20,11 +19,8 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "aux = pd.read_csv('data/well_level_aux_combined.csv.gz')\n",
     "main = pd.read_csv('data/treatment_level_aux_combined.csv.gz')\n",
-    "\n",
-    "columns = [str(i) for i in range(672)]\n",
-    "well_data = aux[columns].to_numpy()"
+    "columns = [str(i) for i in range(672)]"
    ]
   },
   {

diff --git a/bbbc022/data/well_level_aux_combined.csv.gz b/bbbc022/data/well_level_aux_combined.csv.gz