Update ploidy table path

broadinstitute · Sep 21, 2022 · 65ee3a7 · 65ee3a7
1 parent 710a896
commit 65ee3a7
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/inputs/values/ref_panel_1kg.json b/inputs/values/ref_panel_1kg.json
@@ -2238,7 +2238,7 @@
     "name": "ref_panel_1kg",
     "outlier_cutoff_table": "gs://gatk-sv-resources-public/hg38/v0/sv-resources/ref-panel/1KG/v1/module03_outlier_cutoff_table.tsv",
     "ped_file": "gs://gcp-public-data--broad-references/hg38/v0/sv-resources/ref-panel/1KG/v1/ped/1kg_ref_panel_v1.ped",
-    "ploidy_table": "gs://broad-dsde-methods-markw/1kgp/ref_panel_1kg.ploidy.FEMALE_chrY_1.tsv",
+    "ploidy_table": "gs://gatk-sv-ref-panel-1kg/outputs/ClusterBatch/mw-concordance/ref_panel_1kg.ploidy.FEMALE_chrY_1.tsv",
     "qc_definitions": "gs://gatk-sv-ref-panel-1kg/outputs/GATKSVPipelineBatch/38c65ca4-2a07-4805-86b6-214696075fef/ref_panel_1kg.qc_definitions.tsv",
     "qc_file": "gs://gatk-sv-ref-panel-1kg/outputs/GATKSVPipelineBatch/38c65ca4-2a07-4805-86b6-214696075fef/sv_qc.ref_panel_1kg.tsv",
     "raw_sr_background_fail_file": "gs://gatk-sv-ref-panel-1kg/outputs/GATKSVPipelineBatch/38c65ca4-2a07-4805-86b6-214696075fef/call-GenotypeBatch/GenotypeBatch/ad17f522-0950-4f0a-9148-a13f689082ed/call-GenotypePESRPart2/GenotypePESRPart2/ce1f4075-1a3e-44b5-9cfe-bfb701327616/call-TripleStreamCatFail/cacheCopy/ref_panel_1kg.genotype_SR_part2_background_fail.txt",