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Integer-conformant AF values #661

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Integer-conformant AF values #661

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2 changes: 1 addition & 1 deletion src/sv-pipeline/05_annotation/scripts/compute_AFs.py
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Expand Up @@ -180,7 +180,7 @@ def calc_allele_freq(record, samples, prefix=None, hemi=False):

# Adjust hemizygous allele number and allele count, if optioned
if hemi:
AN = AN / 2
AN = round(AN / 2)
# For hemizygous sites, AC must be the sum of all non-reference *genotypes*, not alleles
AC = n_gts_with_gt_0_alts

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