GGVCFs changes to revert "no data" calls to "./." and change GQ0 hom-refs to no-calls #4006

Job	Run time
check if the environment has privileges	1s
build and push gatk docker to artifacts	22m 6s
Validate script WDLs using womtools	57s
Validate generated WDLs using womtools	13m 26s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	27m 24s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	32m 52s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	24m 29s
WDL test RUN_M2_WDL on cromwell	18m 36s
WDL test RUN_CNN_WDL on cromwell	17m 51s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	14m 2s
Java 17.0.6+10 build and test cloud	14m 53s
Java 17.0.6+10 build and test integration	32m 10s
Java 17.0.6+10 build and test unit	21m 33s
Java 17.0.6+10 test on docker integration	36m 16s
Java 17.0.6+10 test on docker unit	23m 31s
Java 17.0.6+10 test on docker variantcalling	57m 2s
Java 17.0.6+10 test on docker conda	33m 44s
	6h 30m 53s

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