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fixed the test, now can you give me attention?
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jamesemery committed Aug 13, 2018
1 parent c687b93 commit 12f4487
Showing 1 changed file with 1 addition and 1 deletion.
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Expand Up @@ -246,7 +246,7 @@ public void testOpticalDuplicatesTiebrokenByPhysicalLocationNotStartPosition(fin
final boolean isDuplicate = compare < 0;

// NOTE these reads are offset slightly but should have the same unclipped start postitions
tester.addMatePair(readName1, 1,2, 46, false, false, !isDuplicate, !isDuplicate, "6S42M28S", "3S73M", true, false, false, false, false, DEFAULT_BASE_QUALITY);
tester.addMatePair(readName1, 1,2, 46, false, false, !isDuplicate, !isDuplicate, "6S42M28S", "3S68M", true, false, false, false, false, DEFAULT_BASE_QUALITY);
tester.addMatePair(readName2, 1,2, 51, false, false, isDuplicate, isDuplicate, "6S42M28S", "8S68M", true, false, false, false, false, DEFAULT_BASE_QUALITY);
tester.runTest();
}
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