Implementing suggested changes from PR review:

* remove Rdata * change loading Rdata to source the corresponding R script
broadinstitute · Mar 27, 2018 · 937b4f3 · 937b4f3
1 parent 1460bad
commit 937b4f3
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Showing 6 changed files with 2 additions and 4 deletions.
diff --git a/scripts/sv/evaluation/general/AccountingAndPrep/func_collectSizes.R b/scripts/sv/evaluation/general/AccountingAndPrep/func_collectSizes.R
@@ -82,6 +82,4 @@ collectSizes <- function(mantaDelSizesFile,
     }
 
     result
-}
-
-save.image("func_collectSizes.Rdata")
+}
diff --git a/scripts/sv/evaluation/general/AccountingAndPrep/func_collectSizes.Rdata b/scripts/sv/evaluation/general/AccountingAndPrep/func_collectSizes.Rdata
diff --git a/scripts/sv/evaluation/general/InsDupRPL/func_haplotypeConcordance_dupDup.RData b/scripts/sv/evaluation/general/InsDupRPL/func_haplotypeConcordance_dupDup.RData
diff --git a/scripts/sv/evaluation/general/InsDupRPL/func_haplotypeConcordance_insDup.RData b/scripts/sv/evaluation/general/InsDupRPL/func_haplotypeConcordance_insDup.RData
diff --git a/scripts/sv/evaluation/general/InsDupRPL/func_haplotypeConcordnace_insIns.RData b/scripts/sv/evaluation/general/InsDupRPL/func_haplotypeConcordnace_insIns.RData
diff --git a/scripts/sv/evaluation/manage/AccountingAndPrep/plotInsDelSizes.R b/scripts/sv/evaluation/manage/AccountingAndPrep/plotInsDelSizes.R
@@ -2,7 +2,7 @@
 # and deletion calls
 
 #########################################################################
-load("/Users/shuang/GATK/dsde-methods-sv/scripts/evaluation/AccountingAndPrep/func_collectSizes.Rdata")
+source("../../general/AccountingAndPrep/func_collectSizes.R")
 
 args<-commandArgs(TRUE)
 wd <- args[1]
-Original file line number
+Diff line change
@@ Expand Up / @@ -82,6 +82,4 @@ collectSizes <- function(mantaDelSizesFile, @@
         }
         result
-    }
-    save.image("func_collectSizes.Rdata")
+    }