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(SV) refactor AssemblyContigAlignmentsConfigPicker (#4971)
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* clean up and bump test coverage
 * logic change: new option to keep gap-split alignments together or not, and
   opts to NOT to keep them together when one is contained by other alignments
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@SHuang-Broad
SHuang-Broad authored Jul 19, 2018
1 parent e0df985 commit 9c0a867
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