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gcnvkernel tunings#4720

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mbabadi merged 4 commits intomasterbroadinstitute/gatk:masterfrom mb_gcnvkernel_tuningbroadinstitute/gatk:mb_gcnvkernel_tuningCopy head branch name to clipboardMay 15, 2018

+599-378

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Commits on Mar 30, 2018

• a more appropriate posterior admixing strategy

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• two-stage calling; warmup with marginalized copy-number states (neglecting correlations between copy numbers), then mean-field between discrete and continious RVs (though with correlations between …

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Commits on Apr 1, 2018

• capped phred-scaled probability to what is allowed by machine precision to avoid inf

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Commits on Apr 30, 2018

• save ELBO history

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