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broadinstitute / gatk Public

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Updated MarkDuplicates Scoring and Comparison code to reflect mismatches to picard#5023

Merged

jamesemery merged 4 commits intomasterbroadinstitute/gatk:masterfrom je_updateDefaultScoringMechanismbroadinstitute/gatk:je_updateDefaultScoringMechanismCopy head branch name to clipboard

Aug 15, 2018

+66-50

Conversation Commits4 (4)Checks Files changed

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Commits on Aug 15, 2018

Updated the scoring code to no longer take into account the unclipped start position of mismatching reads. Additionally changed the score to be a double packed short value in order to better reflec…
jamesemery
committed
updating the comments
jamesemery
committed
updating the comments
jamesemery
committed
removing the test of MarkDuplicatesGATK which is out of date
jamesemery
committed

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