Code

Implement SVConcordance tool#7977

Code

Merged

mwalker174 merged 4 commits intomasterbroadinstitute/gatk:masterfrom mw_sv_concordancebroadinstitute/gatk:mw_sv_concordanceCopy head branch name to clipboardFeb 9, 2023

+3,265-1,695

Commits

Commits on Feb 1, 2023

• Implement SVConcordance tool

  mwalker174

  committed
  77fa2f8

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• Address reviewer comments; greatly simplify clustering; add ctx/cpx support

  mwalker174

  committed
  52017bb

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• Treat missing truth samples as no-call; remove no-call from AF calculations

  mwalker174

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  69ec8ad

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Commits on Feb 2, 2023

• Don't write CN fields if not in the header

  mwalker174

  committed
  27cf6ef

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