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Added resource usage section to the GermlineCNVCaller java doc. #8064

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merged 1 commit into from
Mar 28, 2023

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Added guidelines for resource usage that we use for running gCNV to GermlineCNVCaller doc. This addressed #6166.

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gatk-bot commented Oct 19, 2022

Github actions tests reported job failures from actions build 3284842037
Failures in the following jobs:

Test Type JDK Job ID Logs
integration 8 3284842037.0 logs
integration 8 3284842037.0 logs
integration 8 3284842037.0 logs

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codecov bot commented Oct 19, 2022

Codecov Report

Merging #8064 (cc9f50a) into master (a3c1d2c) will decrease coverage by 7.452%.
The diff coverage is n/a.

❗ Current head cc9f50a differs from pull request most recent head b92dd7e. Consider uploading reports for the commit b92dd7e to get more accurate results

Additional details and impacted files
@@               Coverage Diff               @@
##              master     #8064       +/-   ##
===============================================
- Coverage     86.658%   79.205%   -7.452%     
+ Complexity     39020     36810     -2210     
===============================================
  Files           2337      2337               
  Lines         182961    182961               
  Branches       20080     20079        -1     
===============================================
- Hits          158550    144915    -13635     
- Misses         17363     31204    +13841     
+ Partials        7048      6842      -206     
Impacted Files Coverage Δ
...hellbender/tools/copynumber/GermlineCNVCaller.java 81.000% <ø> (ø)
...adinstitute/hellbender/utils/help/TestWDLTool.java 0.000% <0.000%> (-100.000%) ⬇️
...kers/filters/VariantFiltrationIntegrationTest.java 0.658% <0.000%> (-99.342%) ⬇️
...s/variantutils/VariantsToTableIntegrationTest.java 0.714% <0.000%> (-99.286%) ⬇️
...dorientation/CollectF1R2CountsIntegrationTest.java 0.714% <0.000%> (-99.286%) ⬇️
...der/tools/walkers/sv/SVClusterIntegrationTest.java 0.504% <0.000%> (-98.992%) ⬇️
.../walkers/bqsr/BaseRecalibratorIntegrationTest.java 1.031% <0.000%> (-98.969%) ⬇️
...tion/ReferenceBlockConcordanceIntegrationTest.java 0.840% <0.000%> (-98.599%) ⬇️
...tute/hellbender/tools/FlagStatIntegrationTest.java 1.724% <0.000%> (-98.276%) ⬇️
...park/pipelines/CountReadsSparkIntegrationTest.java 1.786% <0.000%> (-98.214%) ⬇️
... and 213 more

@asmirnov239 asmirnov239 force-pushed the as_gcnv_doc_resource_management branch from 6798fd2 to 1e3bb32 Compare November 10, 2022 23:06
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Github actions tests reported job failures from actions build 3441109117
Failures in the following jobs:

Test Type JDK Job ID Logs
integration 8 3441109117.0 logs

@asmirnov239 asmirnov239 force-pushed the as_gcnv_doc_resource_management branch from 1e3bb32 to cc9f50a Compare February 2, 2023 23:01
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gatk-bot commented Feb 3, 2023

Github actions tests reported job failures from actions build 4079416605
Failures in the following jobs:

Test Type JDK Job ID Logs
integration 8 4079416605.0 logs

@asmirnov239 asmirnov239 force-pushed the as_gcnv_doc_resource_management branch from b92dd7e to f7b1b2e Compare February 6, 2023 23:56
@asmirnov239 asmirnov239 requested a review from mwalker174 March 6, 2023 20:10
@asmirnov239 asmirnov239 merged commit 4dc8e2a into master Mar 28, 2023
@asmirnov239 asmirnov239 deleted the as_gcnv_doc_resource_management branch March 28, 2023 17:01
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3 participants