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brucemoran · May 14, 2021 · a8ae70d · a8ae70d
1 parent aed133a
commit a8ae70d
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/R/aracne-ap_viper.R b/R/aracne-ap_viper.R
@@ -465,7 +465,7 @@ fgsea_ssgsea_msviper <- function(mra, mra_stat = "p.value", genome_prefix, msigd
                                     contrast = paste0(tag, " msViper Regulon Genesets"),
                                     metadata = metadata)
       names(ssgsea_pca_list) <- sigunames
-      save(ssgsea_pca_list, file = paste0(output_dir, "/ssgsea/data/", tag , ".ssgsea_pca_viper.RData"))
+      save(ssgsea_pca_list, pways, log2_tpm_mat, metadata, file = paste0(output_dir, "/ssgsea/data/", tag , ".ssgsea_pca_viper.RData"))
     }
   }
 }