Release extractox 1.0.0 · c1au6i0/extractox

Bug Fixes

Fixed extr_iris extracting the correct number of chemicals without
repetition (#15).
Fixed extr_comtox working when a single download_items different from
DTXCID is selected (#17).
Fixed extr_casrn_from_cid failure when no results are found.

Added extr_ice_assay_names to retrieve ICE assay names (#16).
Added extr_monograph to check if a substance is listed in WHO IARC
monograph and return its details (#19).
Added extr_pprtv to extract information from the EPA Provisional
Peer-Reviewed Toxicity Values database (#20). Introduced save_to_cache
and load_from_cache functions to avoid re-downloading the file each time.
See force argument.

Removed cancer_types argument from extr_iris. Database returns a
dataframe with different columns based on request arguments.
Removed stop_at_warning argument from extr_casrn_from_cid. Now warns
and returns a dataframe with NA if no IDs are found.
extr_tox now returns a longer list of dataframes, including the outputs
of extr_monograph and extr_pprtv.

Added verbose argument to all extr_ functions (#18).
Unified behavior across all extr_ functions when chemicals are not found
(#30-#35):
- For all functions except extr_comptox, a query column reports the IDs
  searched. In extr_comptox, this info is in the main_sheet element. For
  extr_ice, query values contain all IDs found.
- Results now contain rows with NA values for all columns (except query).
- extr_pprtv and extr_monograph use save_and_match to output results
  with NA for missing IDs.
Improved and extended all unit tests.
extr_comptox now outputs a list of dataframes with clean names.
Fixed extr_ctd column names: pub_med_ids or pub_med_i_ds are now
pubmed_ids.
Introduced extr_pubchem_section_ internal function to fetch FEMA and GHS
info, avoiding repeated code.
Introduced check_na_warn internal function to generate warnings for
missing IDs.
Created with_extr_sandbox to handle cache for CRAN examples.