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Do not use clinical data MVs #10847

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onursumer
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@onursumer onursumer commented Jun 20, 2024

  • use clinical_data_derived table when filtering both numerical and categorical clinical data
  • use clinical_attribute_meta table to group clinical attribute names
  • remove redundant clinical data count methods and SQL

@onursumer onursumer requested a review from alisman June 20, 2024 18:25
@onursumer onursumer force-pushed the do-not-use-clinical-data-mvs branch from 3abfbe9 to 2e14852 Compare June 21, 2024 17:48
@onursumer onursumer requested a review from haynescd June 21, 2024 17:49
@onursumer onursumer force-pushed the do-not-use-clinical-data-mvs branch 2 times, most recently from 542286f to 1b168a1 Compare June 21, 2024 22:38
@onursumer onursumer marked this pull request as ready for review June 21, 2024 22:40
@haynescd haynescd force-pushed the do-not-use-clinical-data-mvs branch from 7095007 to 8fd08c2 Compare June 24, 2024 18:54
haynescd
haynescd previously approved these changes Jun 24, 2024
@haynescd haynescd merged commit a484e2e into cBioPortal:demo-rfc80-poc Jun 24, 2024
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@onursumer onursumer deleted the do-not-use-clinical-data-mvs branch June 26, 2024 18:47
haynescd added a commit that referenced this pull request Nov 25, 2024
* use clinical_data_derived instead of sample_clinical_attribute_numeric_mv and patient_clinical_attribute_numeric_mv

* use clinical_attribute_meta instead of sample_clinical_attribute_numeric_mv and patient_clinical_attribute_numeric_mv

* remove unused clinical data count methods and SQL

* fix numericalClinicalDataCountFilter

* Move CategoricalClinicalAttributeFilter to repository

* remove unused columns

* Add override to methods

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Co-authored-by: haynescd <[email protected]>
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2 participants