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Scikit learn instructions #6

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Feb 17, 2020
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Scikit learn instructions #6

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MAINT: upgrading scikit-learn HOW-TOwq
Feb 5, 2020
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17 changes: 17 additions & 0 deletions README.md
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Expand Up @@ -42,3 +42,20 @@
│   └── validation-tests
└── train.sh
```

### Installing a new version of scikit-learn in a production release of QIIME 2

```bash
ssh [email protected]
module load anaconda
wget https://data.qiime2.org/distro/core/qiime2-$RELEASE-py36-linux-conda.yml
conda env create -n qiime2-$RELEASE-sklearn --file qiime2-$RELEASE-py36-linux-conda.yml
conda activate qiime2-$RELEASE-sklearn
conda remove q2-feature-classifier
git clone https://github.com/qiime2/q2-feature-classifier
cd q2-feature-classifier
make install
conda install -c conda-forge -c bioconda -c defaults scikit-learn=$VERSION
conda install pytest
make test
```