feat: Update dependencies versions and add new module #200
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| # This file is autogenerated by maturin v1.7.0 | |
| # To update, run | |
| # | |
| # maturin generate-ci github -m py-deepbiop/Cargo.toml --pytest | |
| # | |
| name: Release-Python | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| tags: | |
| - "*" | |
| pull_request: | |
| workflow_dispatch: | |
| permissions: | |
| contents: read | |
| jobs: | |
| linux: | |
| runs-on: ${{ matrix.platform.runner }} | |
| strategy: | |
| matrix: | |
| platform: | |
| - runner: ubuntu-latest | |
| target: x86_64 | |
| - runner: ubuntu-latest | |
| target: x86 | |
| - runner: ubuntu-latest | |
| target: aarch64 | |
| - runner: ubuntu-latest | |
| target: armv7 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.x | |
| - name: Build wheels | |
| uses: PyO3/maturin-action@v1 | |
| with: | |
| target: ${{ matrix.platform.target }} | |
| args: --release --out dist --manifest-path py-deepbiop/Cargo.toml | |
| sccache: "true" | |
| manylinux: auto | |
| - name: Upload wheels | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: wheels-linux-${{ matrix.platform.target }} | |
| path: dist | |
| - name: pytest | |
| if: ${{ startsWith(matrix.platform.target, 'x86_64') }} | |
| shell: bash | |
| run: | | |
| set -e | |
| python3 -m venv .venv | |
| source .venv/bin/activate | |
| pip install deepbiop --find-links dist --force-reinstall | |
| pip install pytest | |
| cd py-deepbiop && pytest -vls | |
| - name: pytest | |
| if: ${{ !startsWith(matrix.platform.target, 'x86') && matrix.platform.target != 'ppc64' }} | |
| uses: uraimo/run-on-arch-action@v2 | |
| with: | |
| arch: ${{ matrix.platform.target }} | |
| distro: ubuntu22.04 | |
| githubToken: ${{ github.token }} | |
| install: | | |
| apt-get update | |
| apt-get install -y --no-install-recommends python3 python3-pip | |
| pip3 install -U pip pytest | |
| run: | | |
| set -e | |
| pip3 install deepbiop --find-links dist --force-reinstall | |
| cd py-deepbiop && pytest -vls | |
| musllinux: | |
| runs-on: ${{ matrix.platform.runner }} | |
| strategy: | |
| matrix: | |
| platform: | |
| - runner: ubuntu-latest | |
| target: x86_64 | |
| - runner: ubuntu-latest | |
| target: x86 | |
| - runner: ubuntu-latest | |
| target: aarch64 | |
| - runner: ubuntu-latest | |
| target: armv7 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.x | |
| - name: Build wheels | |
| uses: PyO3/maturin-action@v1 | |
| with: | |
| target: ${{ matrix.platform.target }} | |
| args: --release --out dist --manifest-path py-deepbiop/Cargo.toml | |
| sccache: "true" | |
| manylinux: musllinux_1_2 | |
| - name: Upload wheels | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: wheels-musllinux-${{ matrix.platform.target }} | |
| path: dist | |
| - name: pytest | |
| if: ${{ startsWith(matrix.platform.target, 'x86_64') }} | |
| uses: addnab/docker-run-action@v3 | |
| with: | |
| image: alpine:latest | |
| options: -v ${{ github.workspace }}:/io -w /io | |
| run: | | |
| set -e | |
| apk add py3-pip py3-virtualenv | |
| python3 -m virtualenv .venv | |
| source .venv/bin/activate | |
| pip install deepbiop --no-index --find-links dist --force-reinstall | |
| pip install pytest | |
| cd py-deepbiop && pytest -vls | |
| - name: pytest | |
| if: ${{ !startsWith(matrix.platform.target, 'x86') }} | |
| uses: uraimo/run-on-arch-action@v2 | |
| with: | |
| arch: ${{ matrix.platform.target }} | |
| distro: alpine_latest | |
| githubToken: ${{ github.token }} | |
| install: | | |
| apk add py3-virtualenv | |
| run: | | |
| set -e | |
| python3 -m virtualenv .venv | |
| source .venv/bin/activate | |
| pip install pytest | |
| pip install deepbiop --find-links dist --force-reinstall | |
| cd py-deepbiop && pytest -vls | |
| windows: | |
| runs-on: ${{ matrix.platform.runner }} | |
| strategy: | |
| matrix: | |
| platform: | |
| - runner: windows-latest | |
| target: x64 | |
| - runner: windows-latest | |
| target: x86 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.x | |
| architecture: ${{ matrix.platform.target }} | |
| - name: Build wheels | |
| uses: PyO3/maturin-action@v1 | |
| with: | |
| target: ${{ matrix.platform.target }} | |
| args: --release --out dist --manifest-path py-deepbiop/Cargo.toml | |
| sccache: "true" | |
| - name: Upload wheels | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: wheels-windows-${{ matrix.platform.target }} | |
| path: dist | |
| - name: pytest | |
| if: ${{ !startsWith(matrix.platform.target, 'aarch64') }} | |
| shell: bash | |
| run: | | |
| set -e | |
| python3 -m venv .venv | |
| source .venv/Scripts/activate | |
| pip install deepbiop --find-links dist --force-reinstall | |
| pip install pytest | |
| cd py-deepbiop && pytest -vls | |
| macos: | |
| runs-on: ${{ matrix.platform.runner }} | |
| strategy: | |
| matrix: | |
| platform: | |
| - runner: macos-12 | |
| target: x86_64 | |
| - runner: macos-14 | |
| target: aarch64 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.x | |
| - name: Build wheels | |
| uses: PyO3/maturin-action@v1 | |
| with: | |
| target: ${{ matrix.platform.target }} | |
| args: --release --out dist --manifest-path py-deepbiop/Cargo.toml | |
| sccache: "true" | |
| - name: Upload wheels | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: wheels-macos-${{ matrix.platform.target }} | |
| path: dist | |
| - name: pytest | |
| run: | | |
| set -e | |
| python3 -m venv .venv | |
| source .venv/bin/activate | |
| pip install deepbiop --find-links dist --force-reinstall | |
| pip install pytest | |
| cd py-deepbiop && pytest -vls | |
| sdist: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Build sdist | |
| uses: PyO3/maturin-action@v1 | |
| with: | |
| command: sdist | |
| args: --out dist --manifest-path py-deepbiop/Cargo.toml | |
| - name: Upload sdist | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: wheels-sdist | |
| path: dist | |
| - name: print tag github.ref | |
| run: | | |
| echo "GITHUB_REF: ${{ github.ref }}" | |
| release: | |
| name: Release | |
| runs-on: ubuntu-latest | |
| if: ${{ startsWith(github.ref, 'refs/tags/py-deepbiop-v') }} | |
| needs: [linux, musllinux, windows, macos, sdist] | |
| steps: | |
| - uses: actions/download-artifact@v4 | |
| - name: Publish to PyPI | |
| uses: PyO3/maturin-action@v1 | |
| env: | |
| MATURIN_PYPI_TOKEN: ${{ secrets.PYPI_API_TOKEN }} | |
| with: | |
| command: upload | |
| args: --non-interactive --skip-existing wheels-*/* |