Merge pull request #24 from cauliyang/release-plz-2024-08-20T21-53-05Z

chore: release v0.1.11

Cargo.toml

@@ -4,7 +4,7 @@ members = ["crates/*", "py-deepbiop"]
 default-members = ["crates/*"]
 
 [workspace.package]
-version = "0.1.10"
+version = "0.1.11"
 edition = "2021"
 authors = ["Yangyang Li <[email protected]>"]
 homepage = "https://github.com/cauliyang/DeepBioP"
@@ -61,9 +61,9 @@ flate2 = { version = "1.0.30", features = [
     "zlib-ng",
 ], default-features = false }
 
-deepbiop-fq = { version = "0.1.10", path = "crates/deepbiop-fq" }
-deepbiop-bam = { version = "0.1.10", path = "crates/deepbiop-bam" }
-deepbiop-utils = { version = "0.1.10", path = "crates/deepbiop-utils" }
+deepbiop-fq = { version = "0.1.11", path = "crates/deepbiop-fq" }
+deepbiop-bam = { version = "0.1.11", path = "crates/deepbiop-bam" }
+deepbiop-utils = { version = "0.1.11", path = "crates/deepbiop-utils" }
 
 [profile.opt-dev]
 inherits = "dev"

crates/deepbiop-bam/CHANGELOG.md

@@ -6,6 +6,20 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+## [0.1.11](https://github.com/cauliyang/DeepBioP/compare/deepbiop-bam-v0.1.10...deepbiop-bam-v0.1.11) - 2024-08-25
+
+### Added
+- Update keywords in Cargo.toml files
+- *(io)* Refactor bam2fq function to handle equal seq and qual lengths
+- Add BAM to fastq conversion functionality
+- Add CLI installation guide
+
+### Other
+- Remove unnecessary empty line
+- Improve function and field comments
+- Improve code readability and performance
+- Merge branch 'dev'
+
 ## [0.1.10](https://github.com/cauliyang/DeepBioP/compare/deepbiop-bam-v0.1.9...deepbiop-bam-v0.1.10) - 2024-08-20
 
 ### Added

crates/deepbiop-cli/CHANGELOG.md

@@ -6,6 +6,25 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+## [0.1.11](https://github.com/cauliyang/DeepBioP/compare/deepbiop-cli-v0.1.10...deepbiop-cli-v0.1.11) - 2024-08-25
+
+### Added
+- Add FaToFq command for fastq to fasta conversion
+- Update keywords in Cargo.toml files
+- *(io)* Refactor bam2fq function to handle equal seq and qual lengths
+- Add support for writing compressed fastq files
+- Add fastq to fasta conversion command
+- Add new file fq2fa.rs
+- Add BAM to fastq conversion functionality
+- Add CLI installation guide
+
+### Other
+- Improve file variable names in FqToFa struct
+- Remove unnecessary empty line
+- Improve function and field comments
+- Refactor file_path assignment in bam2fq.rs
+- Merge branch 'dev'
+
 ## [0.1.10](https://github.com/cauliyang/DeepBioP/compare/deepbiop-cli-v0.1.9...deepbiop-cli-v0.1.10) - 2024-08-20
 
 ### Added

crates/deepbiop-fq/CHANGELOG.md

@@ -5,6 +5,16 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [0.1.11](https://github.com/cauliyang/DeepBioP/compare/deepbiop-fq-v0.1.10...deepbiop-fq-v0.1.11) - 2024-08-25
+
+### Added
+- Update keywords in Cargo.toml files
+- Add Python bindings for TensorEncoder
+- Add CLI installation guide
+
+### Other
+- Merge branch 'dev'
+
 ## [0.1.10](https://github.com/cauliyang/DeepBioP/compare/deepbiop-fq-v0.1.9...deepbiop-fq-v0.1.10) - 2024-08-20
 
 ### Added

crates/deepbiop-utils/CHANGELOG.md

@@ -6,6 +6,15 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ## [Unreleased]
 
+## [0.1.11](https://github.com/cauliyang/DeepBioP/compare/deepbiop-utils-v0.1.10...deepbiop-utils-v0.1.11) - 2024-08-25
+
+### Added
+- Update keywords in Cargo.toml files
+- Add CLI installation guide
+
+### Other
+- Merge branch 'dev'
+
 ## [0.1.10](https://github.com/cauliyang/DeepBioP/compare/deepbiop-utils-v0.1.9...deepbiop-utils-v0.1.10) - 2024-08-20
 
 ### Added

crates/deepbiop/CHANGELOG.md

@@ -5,6 +5,15 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [0.1.11](https://github.com/cauliyang/DeepBioP/compare/deepbiop-v0.1.10...deepbiop-v0.1.11) - 2024-08-25
+
+### Added
+- Update keywords in Cargo.toml files
+- Add CLI installation guide
+
+### Other
+- Merge branch 'dev'
+
 ## [0.1.10](https://github.com/cauliyang/DeepBioP/compare/deepbiop-v0.1.9...deepbiop-v0.1.10) - 2024-08-20
 
 ### Added