Merge pull request #125 from DLWoodruff/readthedocs #80

	name: test_h1 # Kotaro Yama

	on:
	push:
	branches: [ main ]
	pull_request:
	branches: [ main ]

	jobs:
	build:

	runs-on: ubuntu-latest
	container:
	image: dlwoodruff/c2fcondatest:latest
	env:
	PATH: /opt/conda/bin:/opt/conda/condabin:/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin

	steps:
	- uses: actions/checkout@v2

	- name: make C++
	run: \|
	cd cell2fire/Cell2FireC
	make
	- name: setup the program
	run: \|
	python setup.py develop

	- name: Lint with flake8
	run: \|
	# stop the build if there are Python syntax errors or undefined names
	flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
	# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
	flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
	- name: create input data
	run: \|
	cd cell2fire
	python main.py --input-instance-folder ../data/Sub20x20/ --output-folder ../results/Sub20x20/Sub20_RW_RI_N10 --sim-years 2 --nsims 10 --finalGrid --weather random --nweathers 100 --Fire-Period-Length 1.0 --ROS-CV 0.0 --seed 123 --IgnitionRad 0 --stats --output-messages --ROS-Threshold 0 --HFI-Threshold 0 --heuristic 1

	- name: run tests
	run: \|
	cd tests
	pytest test_h1.py --cov=../cell2fire --cov=./ --cov-report=xml

	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v1
	with:
	file: ./tests/coverage.xml
	flags: unittests
	###env_vars: OS,PYTHON
	name: codecov-umbrella
	fail_ci_if_error: false

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