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Fields in vcf are wrongly filled #248

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stolpeo opened this issue Aug 22, 2016 · 0 comments
Closed

Fields in vcf are wrongly filled #248

stolpeo opened this issue Aug 22, 2016 · 0 comments
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0.18

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@stolpeo
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stolpeo commented Aug 22, 2016

Jannovar 0.17 fills the Gene_Name field with the gene id and leaves the Gene_ID field empty.

Jannovar 0.16

Allele|Annotation        |Annotation_Impact|Gene_Name      |Gene_ID        |Feature_Type
T     |intergenic_variant|MODIFIER         |SAMD11         |ENSG00000187634|transcript

Jannovar 0.17

Allele|Annotation        |Annotation_Impact|Gene_Name      |Gene_ID        |Feature_Type
A     |non_coding_transcr|LOW              |ENSG00000223972|               |transcript
@holtgrewe holtgrewe added this to the 0.18 milestone Aug 26, 2016
holtgrewe added a commit to holtgrewe/jannovar that referenced this issue Aug 26, 2016
@holtgrewe
Fixing bug charite#248 for ENSEMBL that used gene_id for gene_name
23ab36a 
closes charite#248
@holtgrewe holtgrewe mentioned this issue Aug 26, 2016
Merged
holtgrewe added a commit that referenced this issue Aug 26, 2016
@holtgrewe
Merge pull request #249 from holtgrewe/fix/fields-in-vcf-are-wrongly-…
2c947e3 
…filled-248

Fixing bug #248 for ENSEMBL that used `gene_id` for `gene_name`
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