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mcflirt #177

Merged
merged 1 commit into from
Nov 18, 2024
Merged

mcflirt #177

merged 1 commit into from
Nov 18, 2024

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birajstha
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split RMS into RMSABS and RMSREL
Tested with CPAC command

    mcflirt -in /ocean/projects/med220004p/bshresth/projects/rbc-runs/output2/working/pipeline_RBCv0/cpac_pipeline_RBCv0_sub-PA001_ses-V1W1/edit_func_81/_scan_facesmatching_run-1/func_drop_trs/sub-PA001_ses-V1W1_task-facesmatching_run-1_bold_resample_calc.nii.gz 
    -out /ocean/projects/med220004p/bshresth/projects/rbc-runs/output2/working/pipeline_RBCv0/cpac_pipeline_RBCv0_sub-PA001_ses-V1W1/_scan_facesmatching_run-1/func_motion_correct_mcflirt_87/sub-PA001_ses-V1W1_task-facesmatching_run-1_bold_resample_calc_mcf.nii.gz 
    -reffile /ocean/projects/med220004p/bshresth/projects/rbc-runs/output2/working/pipeline_RBCv0/cpac_pipeline_RBCv0_sub-PA001_ses-V1W1/_scan_facesmatching_run-1/func_get_fmriprep_ref_84/ref_bold.nii.gz 
    -mats 
    -plots 
    -rmsabs 
    -rmsrel

@nx10
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nx10 commented Nov 18, 2024

Awesome!

@nx10 nx10 merged commit cc85fc5 into childmindresearch:main Nov 18, 2024
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@birajstha birajstha deleted the mcflirt branch November 22, 2024 21:25
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@kaitj kaitj kaitj approved these changes

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@birajstha @nx10 @kaitj