Clean bash scripts

python/copylibsconda.sh

@@ -1,4 +1,6 @@
+#!/bin/bash
 # installs in editable mode, copying the native libraries to the location they are needed
+# NOTE this script needs to be customized for your system and environment name
 
 KERNEL=(`uname -s | tr [A-Z] [a-z]`)
 ARCH=(`uname -m | tr [A-Z] [a-z]`)

python/editableinstall.sh

@@ -1,3 +1,5 @@
 bash copylibsconda.sh
 
+#!/bin/bash
 pip install -e .
+bash copylibsconda.sh

python/hackinstall.sh

@@ -1,20 +1,13 @@
+#!/bin/bash
 # currently unable to get setup.py to copy
 # the c library properly using relative path
 # so this script is a hack that copies the lib directory
-# installs the clij2fft python package then
-# deletes the lib directory
+# then installs the clij2fft python package in editable mode
 
-# script may also be a useful template to follow if trying to install on your system
+# script may be a useful template to follow if trying to install in editable on your system
+# but remember to edit editableinstall.sh to point to the correct location of the lib directory 
+# (i.e. the conda/mamba location on your system)
 
-# first build native code
-echo 'building native code'
-cd ../native
-bash cppbuild.sh
-cd ../python
-
-# now copy the libraries so that they are under the python directory 
-echo 'copying libs'
-mkdir lib
-cp -r ../lib/* lib
+bash pythonbuild.sh
 
 bash editableinstall.sh