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csmsoftware · May 21, 2019 · 0dbc60b · 0dbc60b
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diff --git a/base_tools/CLASSY_toolbox/CLASSY.p b/base_tools/CLASSY_toolbox/CLASSY.p
diff --git a/base_tools/CLASSY_toolbox/Hierarch_sets.p b/base_tools/CLASSY_toolbox/Hierarch_sets.p
diff --git a/base_tools/CLASSY_toolbox/PeakPicking.p b/base_tools/CLASSY_toolbox/PeakPicking.p
diff --git a/base_tools/CLASSY_toolbox/ReallySuper.p b/base_tools/CLASSY_toolbox/ReallySuper.p
diff --git a/base_tools/CLASSY_toolbox/StocC.p b/base_tools/CLASSY_toolbox/StocC.p
diff --git a/base_tools/CLASSY_toolbox/dendrogram.p b/base_tools/CLASSY_toolbox/dendrogram.p
diff --git a/base_tools/CLASSY_toolbox/displaypeak.p b/base_tools/CLASSY_toolbox/displaypeak.p
diff --git a/base_tools/CLASSY_toolbox/euclid_dist.p b/base_tools/CLASSY_toolbox/euclid_dist.p
diff --git a/base_tools/CLASSY_toolbox/find_sets.p b/base_tools/CLASSY_toolbox/find_sets.p
diff --git a/base_tools/CLASSY_toolbox/hier_cluster.p b/base_tools/CLASSY_toolbox/hier_cluster.p
diff --git a/base_tools/CLASSY_toolbox/jackknife.p b/base_tools/CLASSY_toolbox/jackknife.p
diff --git a/base_tools/CLASSY_toolbox/lineup.p b/base_tools/CLASSY_toolbox/lineup.p
diff --git a/base_tools/CLASSY_toolbox/linkage.p b/base_tools/CLASSY_toolbox/linkage.p
diff --git a/base_tools/CLASSY_toolbox/loading.p b/base_tools/CLASSY_toolbox/loading.p
diff --git a/base_tools/CLASSY_toolbox/manual_align.p b/base_tools/CLASSY_toolbox/manual_align.p
diff --git a/base_tools/CLASSY_toolbox/pdist.p b/base_tools/CLASSY_toolbox/pdist.p
diff --git a/base_tools/CLASSY_toolbox/pearson.p b/base_tools/CLASSY_toolbox/pearson.p
diff --git a/base_tools/CLASSY_toolbox/plot_1Ds.p b/base_tools/CLASSY_toolbox/plot_1Ds.p
diff --git a/base_tools/CLASSY_toolbox/simplepick.p b/base_tools/CLASSY_toolbox/simplepick.p
diff --git a/base_tools/CLASSY_toolbox/spearman.p b/base_tools/CLASSY_toolbox/spearman.p
diff --git a/base_tools/CLASSY_toolbox/topological_overlap.p b/base_tools/CLASSY_toolbox/topological_overlap.p
diff --git a/base_tools/JTP_code/DSprogressBar.p b/base_tools/JTP_code/DSprogressBar.p
diff --git a/base_tools/JTP_code/JTPcalibrateNMR.p b/base_tools/JTP_code/JTPcalibrateNMR.p
diff --git a/base_tools/JTP_code/JTPcrossValidatedPCA.p b/base_tools/JTP_code/JTPcrossValidatedPCA.p
diff --git a/base_tools/JTP_code/JTPintergratePPMregion.p b/base_tools/JTP_code/JTPintergratePPMregion.p
diff --git a/base_tools/JTP_code/JTPinterpolateSpectra.p b/base_tools/JTP_code/JTPinterpolateSpectra.p
diff --git a/base_tools/JTP_code/JTPnormalise.p b/base_tools/JTP_code/JTPnormalise.p
diff --git a/base_tools/JTP_code/JTPpca.p b/base_tools/JTP_code/JTPpca.p
diff --git a/base_tools/JTP_code/JTPpermutate.p b/base_tools/JTP_code/JTPpermutate.p
diff --git a/base_tools/JTP_code/JTPplotSpectralVarainceInGroups.p b/base_tools/JTP_code/JTPplotSpectralVarainceInGroups.p
diff --git a/base_tools/JTP_code/JTPscale.p b/base_tools/JTP_code/JTPscale.p
diff --git a/base_tools/JTP_code/MWparseargs.p b/base_tools/JTP_code/MWparseargs.p
diff --git a/base_tools/JTP_code/mjrScale.p b/base_tools/JTP_code/mjrScale.p
diff --git a/base_tools/NPC/CJSbaseline.p b/base_tools/NPC/CJSbaseline.p
diff --git a/base_tools/NPC/CJSpeakwidth.p b/base_tools/NPC/CJSpeakwidth.p
diff --git a/base_tools/PeakAlignment/RSPA/FFTcorr.p b/base_tools/PeakAlignment/RSPA/FFTcorr.p
diff --git a/base_tools/PeakAlignment/RSPA/alignSp.p b/base_tools/PeakAlignment/RSPA/alignSp.p
diff --git a/base_tools/PeakAlignment/RSPA/attachSegments.p b/base_tools/PeakAlignment/RSPA/attachSegments.p
diff --git a/base_tools/PeakAlignment/RSPA/configureRSPA.p b/base_tools/PeakAlignment/RSPA/configureRSPA.p
diff --git a/base_tools/PeakAlignment/RSPA/corrcoef_aligned.p b/base_tools/PeakAlignment/RSPA/corrcoef_aligned.p
diff --git a/base_tools/PeakAlignment/RSPA/doAlignment.p b/base_tools/PeakAlignment/RSPA/doAlignment.p
diff --git a/base_tools/PeakAlignment/RSPA/findMid.p b/base_tools/PeakAlignment/RSPA/findMid.p
diff --git a/base_tools/PeakAlignment/RSPA/getAmpThr.p b/base_tools/PeakAlignment/RSPA/getAmpThr.p
diff --git a/base_tools/PeakAlignment/RSPA/getCorellation.p b/base_tools/PeakAlignment/RSPA/getCorellation.p
diff --git a/base_tools/PeakAlignment/RSPA/localRecurAlign.p b/base_tools/PeakAlignment/RSPA/localRecurAlign.p
diff --git a/base_tools/PeakAlignment/RSPA/matchSegments.p b/base_tools/PeakAlignment/RSPA/matchSegments.p
diff --git a/base_tools/PeakAlignment/RSPA/peakPeaks.p b/base_tools/PeakAlignment/RSPA/peakPeaks.p
diff --git a/base_tools/PeakAlignment/RSPA/plotPeaksOrSegments.p b/base_tools/PeakAlignment/RSPA/plotPeaksOrSegments.p
diff --git a/base_tools/PeakAlignment/RSPA/plotTwoA.p b/base_tools/PeakAlignment/RSPA/plotTwoA.p
diff --git a/base_tools/PeakAlignment/RSPA/plotTwoWithPeaks.p b/base_tools/PeakAlignment/RSPA/plotTwoWithPeaks.p
diff --git a/base_tools/PeakAlignment/RSPA/plotTwoWithSegmentD.p b/base_tools/PeakAlignment/RSPA/plotTwoWithSegmentD.p
diff --git a/base_tools/PeakAlignment/RSPA/plotTwoWithSegmentsD.p b/base_tools/PeakAlignment/RSPA/plotTwoWithSegmentsD.p
diff --git a/base_tools/PeakAlignment/RSPA/ppmToPt.p b/base_tools/PeakAlignment/RSPA/ppmToPt.p
diff --git a/base_tools/PeakAlignment/RSPA/private/normalise.p b/base_tools/PeakAlignment/RSPA/private/normalise.p
diff --git a/base_tools/PeakAlignment/RSPA/segmentate.p b/base_tools/PeakAlignment/RSPA/segmentate.p
diff --git a/base_tools/PeakAlignment/RSPA/segmentateSp.p b/base_tools/PeakAlignment/RSPA/segmentateSp.p
diff --git a/base_tools/PeakAlignment/RSPA/selectRefSp.p b/base_tools/PeakAlignment/RSPA/selectRefSp.p
diff --git a/base_tools/PeakAlignment/RSPA/setup.p b/base_tools/PeakAlignment/RSPA/setup.p
diff --git a/base_tools/PeakAlignment/RSPA/sgolay.p b/base_tools/PeakAlignment/RSPA/sgolay.p
diff --git a/base_tools/PeakAlignment/RSPA/sgolayDeriv.p b/base_tools/PeakAlignment/RSPA/sgolayDeriv.p
diff --git a/base_tools/PeakAlignment/RSPA/shift.p b/base_tools/PeakAlignment/RSPA/shift.p
diff --git a/base_tools/PeakAlignment/RSPA/validatePeaks.p b/base_tools/PeakAlignment/RSPA/validatePeaks.p
diff --git a/base_tools/PeakAlignment/RSPA/zeroPad.p b/base_tools/PeakAlignment/RSPA/zeroPad.p
diff --git a/base_tools/PeakAlignment/uiAlignment/adjustColorMap.p b/base_tools/PeakAlignment/uiAlignment/adjustColorMap.p
diff --git a/base_tools/PeakAlignment/uiAlignment/defineCCOWPrmtrs.p b/base_tools/PeakAlignment/uiAlignment/defineCCOWPrmtrs.p
diff --git a/base_tools/PeakAlignment/uiAlignment/definePeakBndrs.p b/base_tools/PeakAlignment/uiAlignment/definePeakBndrs.p
diff --git a/base_tools/PeakAlignment/uiAlignment/definePeakPickingPrmtrs.p b/base_tools/PeakAlignment/uiAlignment/definePeakPickingPrmtrs.p
diff --git a/base_tools/PeakAlignment/uiAlignment/defineRSPAPrmtrs.p b/base_tools/PeakAlignment/uiAlignment/defineRSPAPrmtrs.p
diff --git a/base_tools/PeakAlignment/uiAlignment/doStocsyUIAlignment.p b/base_tools/PeakAlignment/uiAlignment/doStocsyUIAlignment.p
diff --git a/base_tools/PeakAlignment/uiAlignment/drawLineObjects.p b/base_tools/PeakAlignment/uiAlignment/drawLineObjects.p
diff --git a/base_tools/PeakAlignment/uiAlignment/exportProcData.p b/base_tools/PeakAlignment/uiAlignment/exportProcData.p
diff --git a/base_tools/PeakAlignment/uiAlignment/getXTickMarks.p b/base_tools/PeakAlignment/uiAlignment/getXTickMarks.p
diff --git a/base_tools/PeakAlignment/uiAlignment/lineup.p b/base_tools/PeakAlignment/uiAlignment/lineup.p
diff --git a/base_tools/PeakAlignment/uiAlignment/plotCCValues.p b/base_tools/PeakAlignment/uiAlignment/plotCCValues.p
diff --git a/base_tools/PeakAlignment/uiAlignment/plotTwo.p b/base_tools/PeakAlignment/uiAlignment/plotTwo.p
diff --git a/base_tools/PeakAlignment/uiAlignment/private/CCOW.p b/base_tools/PeakAlignment/uiAlignment/private/CCOW.p
diff --git a/base_tools/PeakAlignment/uiAlignment/private/findPeaks.p b/base_tools/PeakAlignment/uiAlignment/private/findPeaks.p
diff --git a/base_tools/PeakAlignment/uiAlignment/private/getDataMatrix.p b/base_tools/PeakAlignment/uiAlignment/private/getDataMatrix.p
diff --git a/base_tools/PeakAlignment/uiAlignment/private/localRSPA.p b/base_tools/PeakAlignment/uiAlignment/private/localRSPA.p
diff --git a/base_tools/PeakAlignment/uiAlignment/private/plotPeakStats.p b/base_tools/PeakAlignment/uiAlignment/private/plotPeakStats.p
diff --git a/base_tools/PeakAlignment/uiAlignment/private/ppmToPt.p b/base_tools/PeakAlignment/uiAlignment/private/ppmToPt.p
diff --git a/base_tools/PeakAlignment/uiAlignment/private/uiCCOW.p b/base_tools/PeakAlignment/uiAlignment/private/uiCCOW.p
diff --git a/base_tools/PeakAlignment/uiAlignment/private/uiRSPA.p b/base_tools/PeakAlignment/uiAlignment/private/uiRSPA.p
diff --git a/base_tools/PeakAlignment/uiAlignment/removePeakBndrs.p b/base_tools/PeakAlignment/uiAlignment/removePeakBndrs.p
diff --git a/base_tools/PeakAlignment/uiAlignment/selectTarget.p b/base_tools/PeakAlignment/uiAlignment/selectTarget.p
diff --git a/base_tools/PeakAlignment/uiAlignment/setFigureToolBars.p b/base_tools/PeakAlignment/uiAlignment/setFigureToolBars.p
diff --git a/base_tools/PeakAlignment/uiAlignment/setSTOCSYmenus.p b/base_tools/PeakAlignment/uiAlignment/setSTOCSYmenus.p
diff --git a/base_tools/PeakAlignment/uiAlignment/setupdefaults.p b/base_tools/PeakAlignment/uiAlignment/setupdefaults.p
diff --git a/base_tools/PeakAlignment/uiAlignment/switchData.p b/base_tools/PeakAlignment/uiAlignment/switchData.p
diff --git a/base_tools/PeakAlignment/uiAlignment/uiAlignment.p b/base_tools/PeakAlignment/uiAlignment/uiAlignment.p
diff --git a/base_tools/PeakAlignment/uiAlignment/uiSelectReference.p b/base_tools/PeakAlignment/uiAlignment/uiSelectReference.p
diff --git a/base_tools/PeakAlignment/uiAlignment/uiShowReference.p b/base_tools/PeakAlignment/uiAlignment/uiShowReference.p
diff --git a/base_tools/PeakAlignment/uiAlignment/zoomcallback.p b/base_tools/PeakAlignment/uiAlignment/zoomcallback.p
diff --git a/base_tools/STOCSY/Iterative STOCSY/CJSplotPeaklist.p b/base_tools/STOCSY/Iterative STOCSY/CJSplotPeaklist.p
diff --git a/base_tools/STOCSY/Iterative STOCSY/ISTOCSY.p b/base_tools/STOCSY/Iterative STOCSY/ISTOCSY.p
diff --git a/base_tools/STOCSY/Iterative STOCSY/ISTOCSY_plot.p b/base_tools/STOCSY/Iterative STOCSY/ISTOCSY_plot.p
diff --git a/base_tools/STOCSY/Iterative STOCSY/findPeaksKV.p b/base_tools/STOCSY/Iterative STOCSY/findPeaksKV.p
diff --git a/base_tools/STOCSY/STOCSY Editing/STOCSYE.p b/base_tools/STOCSY/STOCSY Editing/STOCSYE.p
diff --git a/base_tools/STOCSY/STOCSY Editing/stocsyCS.p b/base_tools/STOCSY/STOCSY Editing/stocsyCS.p
diff --git a/base_tools/STOCSY/STOCSY.p b/base_tools/STOCSY/STOCSY.p
diff --git a/base_tools/STOCSY/corrcoeffs.p b/base_tools/STOCSY/corrcoeffs.p
diff --git a/base_tools/mjrMatlab_rev41m/matlabSource/mjrInternal/cv/mjrGetCvSet.p b/base_tools/mjrMatlab_rev41m/matlabSource/mjrInternal/cv/mjrGetCvSet.p
diff --git a/base_tools/mjrMatlab_rev41m/matlabSource/mjrInternal/da/basicClassify.p b/base_tools/mjrMatlab_rev41m/matlabSource/mjrInternal/da/basicClassify.p
diff --git a/base_tools/mjrMatlab_rev41m/matlabSource/mjrInternal/da/getDummy.p b/base_tools/mjrMatlab_rev41m/matlabSource/mjrInternal/da/getDummy.p
diff --git a/base_tools/mjrMatlab_rev41m/matlabSource/mjrInternal/da/maxClassify.p b/base_tools/mjrMatlab_rev41m/matlabSource/mjrInternal/da/maxClassify.p
diff --git a/base_tools/mjrMatlab_rev41m/matlabSource/mjrInternal/da/mjrGetConfusionMatrix.p b/base_tools/mjrMatlab_rev41m/matlabSource/mjrInternal/da/mjrGetConfusionMatrix.p
diff --git a/base_tools/mjrMatlab_rev41m/matlabSource/mjrInternal/da/reDummy.p b/base_tools/mjrMatlab_rev41m/matlabSource/mjrInternal/da/reDummy.p
diff --git a/base_tools/mjrMatlab_rev41m/matlabSource/mjrInternal/ext/sens_spec.p b/base_tools/mjrMatlab_rev41m/matlabSource/mjrInternal/ext/sens_spec.p
diff --git a/base_tools/mjrMatlab_rev41m/matlabSource/mjrInternal/ext/sens_spec_plot.p b/base_tools/mjrMatlab_rev41m/matlabSource/mjrInternal/ext/sens_spec_plot.p
diff --git a/base_tools/mjrMatlab_rev41m/matlabSource/mjrInternal/o2pls/mjrO2pls.p b/base_tools/mjrMatlab_rev41m/matlabSource/mjrInternal/o2pls/mjrO2pls.p
diff --git a/base_tools/mjrMatlab_rev41m/matlabSource/mjrInternal/o2pls/mjrO2plsPred.p b/base_tools/mjrMatlab_rev41m/matlabSource/mjrInternal/o2pls/mjrO2plsPred.p
diff --git a/base_tools/mjrMatlab_rev41m/matlabSource/mjrInternal/scaling/mjrRescale.p b/base_tools/mjrMatlab_rev41m/matlabSource/mjrInternal/scaling/mjrRescale.p
diff --git a/base_tools/mjrMatlab_rev41m/matlabSource/mjrInternal/scaling/mjrScaleApply.p b/base_tools/mjrMatlab_rev41m/matlabSource/mjrInternal/scaling/mjrScaleApply.p
diff --git a/base_tools/mjrMatlab_rev41m/matlabSource/mjrInternal/scaling/mjrScaleCvSet.p b/base_tools/mjrMatlab_rev41m/matlabSource/mjrInternal/scaling/mjrScaleCvSet.p
diff --git a/base_tools/mjrMatlab_rev41m/matlabSource/mjrMainO2pls.p b/base_tools/mjrMatlab_rev41m/matlabSource/mjrMainO2pls.p
diff --git a/base_tools/plots/CJScolormaps.p b/base_tools/plots/CJScolormaps.p
diff --git a/base_tools/plots/CJSo2plsPlot.p b/base_tools/plots/CJSo2plsPlot.p
diff --git a/base_tools/plots/CJSpcaPlot.p b/base_tools/plots/CJSpcaPlot.p
diff --git a/base_tools/plots/CJSplotSpectra.p b/base_tools/plots/CJSplotSpectra.p
diff --git a/base_tools/plots/CJSqueryPlot.p b/base_tools/plots/CJSqueryPlot.p
diff --git a/base_tools/plots/CJSquerySplot.p b/base_tools/plots/CJSquerySplot.p
diff --git a/base_tools/plots/CJSstackplot.p b/base_tools/plots/CJSstackplot.p
diff --git a/base_tools/spec_preproc/JTPcircularShift.p b/base_tools/spec_preproc/JTPcircularShift.p
diff --git a/base_tools/spec_preproc/MWparseargs.p b/base_tools/spec_preproc/MWparseargs.p
diff --git a/base_tools/spec_preproc/autophase.p b/base_tools/spec_preproc/autophase.p
diff --git a/base_tools/spec_preproc/baseline.p b/base_tools/spec_preproc/baseline.p
diff --git a/base_tools/spec_preproc/brukpread.p b/base_tools/spec_preproc/brukpread.p
diff --git a/base_tools/spec_preproc/bucket_spectra_rc.p b/base_tools/spec_preproc/bucket_spectra_rc.p
diff --git a/base_tools/spec_preproc/d2r.p b/base_tools/spec_preproc/d2r.p
diff --git a/base_tools/spec_preproc/do_nmrproc_rc.p b/base_tools/spec_preproc/do_nmrproc_rc.p
diff --git a/base_tools/spec_preproc/get_spectra_list_rc.p b/base_tools/spec_preproc/get_spectra_list_rc.p
diff --git a/base_tools/spec_preproc/getbrukpar.p b/base_tools/spec_preproc/getbrukpar.p
diff --git a/base_tools/spec_preproc/logprint.p b/base_tools/spec_preproc/logprint.p
diff --git a/base_tools/spec_preproc/mstrmatch.p b/base_tools/spec_preproc/mstrmatch.p
diff --git a/base_tools/spec_preproc/normalise.p b/base_tools/spec_preproc/normalise.p
diff --git a/base_tools/spec_preproc/normalise_to_100unit_area.p b/base_tools/spec_preproc/normalise_to_100unit_area.p
diff --git a/base_tools/spec_preproc/objphase.p b/base_tools/spec_preproc/objphase.p
diff --git a/base_tools/spec_preproc/phase.p b/base_tools/spec_preproc/phase.p
diff --git a/base_tools/spec_preproc/prob_quot_norm.p b/base_tools/spec_preproc/prob_quot_norm.p
diff --git a/base_tools/spec_preproc/putbrukpar_rc.p b/base_tools/spec_preproc/putbrukpar_rc.p
diff --git a/base_tools/spec_preproc/reducespec_rc_no_popups.p b/base_tools/spec_preproc/reducespec_rc_no_popups.p
diff --git a/base_tools/spec_preproc/reference.p b/base_tools/spec_preproc/reference.p
diff --git a/base_tools/spec_preproc/signal.p b/base_tools/spec_preproc/signal.p
diff --git a/base_tools/spec_preproc/spec_preproc_v5.p b/base_tools/spec_preproc/spec_preproc_v5.p
diff --git a/base_tools/spec_preproc/specread_rc.p b/base_tools/spec_preproc/specread_rc.p
diff --git a/base_tools/spec_preproc/specwrite_rc.p b/base_tools/spec_preproc/specwrite_rc.p
diff --git a/base_tools/spec_preproc/textread_nowhich.p b/base_tools/spec_preproc/textread_nowhich.p
diff --git a/base_tools/utilities/CJSbinContin.p b/base_tools/utilities/CJSbinContin.p
diff --git a/base_tools/utilities/ellipse.p b/base_tools/utilities/ellipse.p