Correctly store stop_point, etc for restart

CHANGES.md

@@ -189,6 +189,33 @@ invalid cylc command is used (instead of a ValueError).
 [#3003](https://github.com/cylc/cylc-flow/pull/3003) - Fix inheritance
 with quotes using shlex.
 
+[#3184](https://github.com/cylc/cylc-flow/pull/3184) - Fix restart
+correctness when the suite has a hold point, stop point, a stop task, a stop
+clock time and/or an auto stop option. These settings are now stored in the
+suite run SQLite file and are retrieved on suite restart. In addition, the
+settings are removed when they are consumed, e.g. if the suite stopped
+previously on reaching the stop point, the stop point would be consumed, so
+that on restart the suite would not stop again immediately.
+
+The `cylc run` command can now accept `--initial-cycle-point=CYCLE-POINT`
+(`--icp=CYCLE-POINT)` and `--start-cycle-point=CYCLE-POINT` options. This
+change should allow the command to have  a more uniform interface with commands
+such as `cylc validate`, and with the final/stop cycle point options).
+
+After this change:
+* `cylc run SUITE POINT` is equivalent to `cylc run --icp=POINT SUITE`.
+* `cylc run -w SUITE POINT` is equivalent to
+  `cylc run -w --start-point=POINT SUITE`.
+
+The `cylc run` and `cylc restart` commands can now accept the
+`--final-cycle-point=POINT` and `--stop-cycle-point=POINT` options. The
+`--until=POINT` option is now an alias for `--final-cycle-point=POINT` option.
+
+The `cylc run` and `cylc restart` commands can now accept the new
+`--auto-shutdown` option. This option overrides the equivalent suite
+configuration to force auto shutdown to be enabled. Previously, it is only
+possible to disable auto shutdown on the command line.
+
 ### Documentation
 
 [#3181](https://github.com/cylc/cylc-flow/pull/3181) - moved documentation to

bin/cylc-check-versions

@@ -69,7 +69,9 @@ def main(_, opts, *args):
 
     # extract task host accounts from the suite
     config = SuiteConfig(
-        suite, suiterc,
+        suite,
+        suiterc,
+        options,
         load_template_vars(options.templatevars, options.templatevars_file))
     account_set = set()
     for name in config.get_namespace_list('all tasks'):

bin/cylc-diff

@@ -136,13 +136,10 @@ def main(parser, options, *args):
     print("Parsing %s (%s)" % (suite1, suite1rc))
     template_vars = load_template_vars(
         options.templatevars, options.templatevars_file)
-    config1 = SuiteConfig(
-        suite1, suite1rc, template_vars,
-        cli_initial_point_string=options.icp).cfg
+    config1 = SuiteConfig(suite1, suite1rc, options, template_vars).cfg
     print("Parsing %s (%s)" % (suite2, suite2rc))
     config2 = SuiteConfig(
-        suite2, suite2rc, template_vars,
-        cli_initial_point_string=options.icp, is_reload=True).cfg
+        suite2, suite2rc, options, template_vars, is_reload=True).cfg
 
     if config1 == config2:
         print("Suite definitions %s and %s are identical" % (suite1, suite2))

bin/cylc-get-suite-config

@@ -126,9 +126,10 @@ def main(parser, options, reg):
         prefix = ''
 
     config = SuiteConfig(
-        suite, suiterc,
-        load_template_vars(options.templatevars, options.templatevars_file),
-        cli_initial_point_string=options.icp, run_mode=options.run_mode)
+        suite,
+        suiterc,
+        options,
+        load_template_vars(options.templatevars, options.templatevars_file))
     if options.tasks:
         for task in config.get_task_name_list():
             print(prefix + task)

bin/cylc-graph

@@ -166,16 +166,15 @@ def graph_inheritance(config):
     print('stop')
 
 
-def get_config(suite, icp=None, template_vars=None):
+def get_config(suite, opts, template_vars=None):
     """Return a SuiteConfig object for the provided reg / path."""
     try:
         suiterc = SuiteSrvFilesManager().get_suite_rc(suite)
     except SuiteServiceFileError:
         # could not find suite, assume we have been given a path instead
         suiterc = suite
         suite = 'test'
-    return SuiteConfig(suite, suiterc, cli_initial_point_string=icp,
-                       template_vars=template_vars)
+    return SuiteConfig(suite, suiterc, opts, template_vars=template_vars)
 
 
 def get_option_parser():
@@ -230,7 +229,7 @@ def main(parser, opts, suite=None, start=None, stop=None):
     template_vars = load_template_vars(
         opts.templatevars, opts.templatevars_file)
 
-    config = get_config(suite, icp=opts.icp, template_vars=template_vars)
+    config = get_config(suite, opts, template_vars=template_vars)
     if opts.namespaces:
         graph_inheritance(config)
     else:

bin/cylc-list

@@ -115,9 +115,10 @@ def main(parser, options, reg):
             [options.all_tasks, options.all_namespaces, options.mro]):
         print("WARNING: -t chosen, ignoring non-tree options.", file=sys.stderr)
     config = SuiteConfig(
-        suite, suiterc,
-        load_template_vars(options.templatevars, options.templatevars_file),
-        cli_initial_point_string=options.icp)
+        suite,
+        suiterc,
+        options,
+        load_template_vars(options.templatevars, options.templatevars_file))
     if options.tree:
         config.print_first_parent_tree(
             pretty=options.box, titles=options.titles)

bin/cylc-submit

@@ -97,9 +97,10 @@ def main(parser, options, suite, *task_ids):
 
     # Load suite config and tasks
     config = SuiteConfig(
-        suite, suiterc,
-        load_template_vars(options.templatevars, options.templatevars_file),
-        cli_initial_point_string=options.icp)
+        suite,
+        suiterc,
+        options,
+        load_template_vars(options.templatevars, options.templatevars_file))
     itasks = []
     for task_id in task_ids:
         name_str, point_str = TaskID.split(task_id)

bin/cylc-validate

@@ -74,6 +74,8 @@ def parse_args():
         default="live", dest="run_mode",
         choices=['live', 'dummy', 'dummy-local', 'simulation'])
 
+    parser.set_defaults(is_validate=True)
+
     return parser
 
 
@@ -92,10 +94,10 @@ def main(_, options, reg):
 
     suite, suiterc = SuiteSrvFilesManager().parse_suite_arg(options, reg)
     cfg = SuiteConfig(
-        suite, suiterc,
+        suite,
+        suiterc,
+        options,
         load_template_vars(options.templatevars, options.templatevars_file),
-        cli_initial_point_string=options.icp,
-        is_validate=True, strict=options.strict, run_mode=options.run_mode,
         output_fname=options.output, mem_log_func=profiler.log_memory)
 
     # Check bounds of sequences