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dafishcode · Mar 3, 2022 · 12d7a94 · 12d7a94
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Showing 9 changed files with 9,841 additions and 2,072 deletions.
diff --git a/.ipynb_checkpoints/CCM_eval-checkpoint.ipynb b/.ipynb_checkpoints/CCM_eval-checkpoint.ipynb
diff --git a/.ipynb_checkpoints/CCM_run-checkpoint.ipynb b/.ipynb_checkpoints/CCM_run-checkpoint.ipynb
diff --git a/.ipynb_checkpoints/LCE-checkpoint.ipynb b/.ipynb_checkpoints/LCE-checkpoint.ipynb
diff --git a/.ipynb_checkpoints/kedm_script-checkpoint.sh b/.ipynb_checkpoints/kedm_script-checkpoint.sh
@@ -0,0 +1,29 @@
+#!/bin/bash
+
+#Define input variables
+pref="single"
+data_type="trace"
+
+
+#Define list
+datapath="/mnlsc/data/MCBL4/dburrows/${pref}/"
+array=($(find $datapath . -maxdepth 1 -name "*kmeans*$data_type*CCM*.h5*" ))
+
+#Loop through and run kEDM
+
+
+for i in "${array[@]}"
+do
+  echo "Running $i"
+  filename=$i
+  searchstring="run"
+  rest=${filename#*$searchstring}
+  savename="${filename:0:$(( ${#filename} - ${#rest} - ${#searchstring} + 6 ))}_${data_type}_CCMxmap.h5"
+
+  edm-xmap -d, --dataset "data" --rho --rho-diff $filename $savename
+
+
+done
+
+echo "Finished!"
+
diff --git a/CCM_eval.ipynb b/CCM_eval.ipynb
diff --git a/CCM_run.ipynb b/CCM_run.ipynb
diff --git a/LCE.ipynb b/LCE.ipynb