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minor fix
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danro9685 committed Sep 20, 2024
1 parent fdc4377 commit b48be64
Showing 1 changed file with 4 additions and 0 deletions.
4 changes: 4 additions & 0 deletions R/mutational.signatures.discovery.R
Original file line number Diff line number Diff line change
Expand Up @@ -177,6 +177,8 @@ signaturesDecomposition <- function( x, K, background_signature = NULL,
quietly = TRUE, verbose = FALSE))
res_clusterEvalQ <- clusterEvalQ(parallel, library("nnls", warn.conflicts = FALSE,
quietly = TRUE, verbose = FALSE))
res_clusterEvalQ <- clusterEvalQ(parallel, library("RhpcBLASctl", warn.conflicts = FALSE,
quietly = TRUE, verbose = FALSE))
clusterExport(parallel, varlist = c(".fit_nmf", ".fit_seed", ".fit_regularized",
".fit_objective"), envir = environment())
clusterExport(parallel, varlist = c("x", "background_signature",
Expand Down Expand Up @@ -532,6 +534,8 @@ signaturesCV <- function( x, beta, normalize_counts = FALSE, cross_validation_en
quietly = TRUE, verbose = FALSE))
res_clusterEvalQ <- clusterEvalQ(parallel, library("nnls", warn.conflicts = FALSE,
quietly = TRUE, verbose = FALSE))
res_clusterEvalQ <- clusterEvalQ(parallel, library("RhpcBLASctl", warn.conflicts = FALSE,
quietly = TRUE, verbose = FALSE))
clusterExport(parallel, varlist = c(".fit_model", "signaturesAssignment", "verbose",
"cross_validation_repetitions", "cross_validation_entries"), envir = environment())
clusterExport(parallel, varlist = c("cross_validation_iterations", "valid_entries", "num_entries",
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