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update dev dockerfile
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nsheff committed Dec 18, 2023
1 parent c6f5f8a commit 1ed4ec5
Showing 1 changed file with 1 addition and 6 deletions.
7 changes: 1 addition & 6 deletions dev.Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -6,8 +6,7 @@ RUN apt-get update -y && \
apt-get install -y libpq-dev && \
apt-get install -y gcc && \
apt-get install -y wget && \
apt-get install -y libcurl4 && \
apt-get install build-essential -y # cpp compiler required for hsnwlib
apt-get install -y libcurl4

RUN pip install --upgrade pip
RUN pip install https://github.com/pepkit/pipestat/archive/refs/heads/dev.zip
Expand All @@ -17,10 +16,6 @@ RUN wget http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigBedToBed -P /u
RUN wget http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedIntersect -P /usr/local/bin
RUN chmod 755 /usr/local/bin/bigBedToBed /usr/local/bin/bedIntersect

COPY geniml /geniml
RUN pip install /geniml
RUN pip install gtokenizers

COPY . /app
RUN pip install -r requirements/requirements-all.txt
RUN pip install -r requirements/requirements-dev.txt
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