Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

uniwig's meta file output is same for start and end #61

Closed
ClaudeHu opened this issue Dec 19, 2024 · 2 comments
Closed

uniwig's meta file output is same for start and end #61

ClaudeHu opened this issue Dec 19, 2024 · 2 comments
Labels
bug Something isn't working likely solved uniwig

Comments

@ClaudeHu
Copy link
Member

I ran gtars.uniwig (master branch) with gtars/tests/data/consensus/consensus1.bed as the input and gtars/tests/hg38.chrom.sizes as the chromosome reference:

cargo run uniwig -f $GTARS/gtars/tests/data/consensus/consensus1.bed -c $GTARS/gtars/tests/hg38.chrom.sizes -m 100 -s 10 -l $OUTPUT -y npy

In the outputs, both end.meta and start.meta are exactly same:

fixedStep chrom=chrX start=50 step=10
fixedStep chrom=chr3 start=500 step=10
fixedStep chrom=chr2 start=300 step=10
fixedStep chrom=chr1 start=1 step=10
donaldcampbelljr added a commit that referenced this issue Dec 19, 2024
@donaldcampbelljr
Copy link
Member

Thanks for the heads up. I believe I've fixed this in the dev branch with the above commit. Pull that and give it a go.

@ClaudeHu
Copy link
Member Author

dev fixed that issue

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
bug Something isn't working likely solved uniwig
Projects
None yet
Development

No branches or pull requests

2 participants