Skip to content

Commit

Permalink
update download paths
Browse files Browse the repository at this point in the history
  • Loading branch information
@davemcg
davemcg committed Jan 7, 2021
1 parent 6dfcec8 commit 1525621
Showing 1 changed file with 11 additions and 23 deletions.
34 changes: 11 additions & 23 deletions inst/app/ui.R
View file
Original file line number Diff line number Diff line change
Expand Up @@ -375,40 +375,28 @@ shinyUI(
fluidRow(column(width = 8, offset = 1, h2("Run plae Locally"))),
fluidRow(column(width = 8, offset = 1, 'If you have 200GB of free hard drive space, you can run plae on your own computer. ', tags$a(href="https://www.github.com/davemcg/plaeApp", "Installation instructions are available in our Github repository"), ' (this is the codebase for the app you are using now).')),
fluidRow(column(width = 8, offset = 1, h2("Seurat Objects"))),
fluidRow(column(width = 8, offset = 1, tags$li(tags$a(href="http://hpc.nih.gov/~mcgaugheyd/scEiaD/2020_12_31/scEiaD_all_seurat_v3.Rdata", "All (~3.5 GB)")))),
fluidRow(column(width = 8, offset = 1, tags$li(tags$a(href="http://hpc.nih.gov/~mcgaugheyd/scEiaD/2020_01_03/scEiaD_all_seurat_v3.Rdata", "All (~2.9 GB)")))),
fluidRow(column(width = 8, offset = 1, h2("AnnData Objects"))),
fluidRow(column(width = 8, offset = 1, tags$li(tags$a(href="http://hpc.nih.gov/~mcgaugheyd/scEiaD/2020_12_31/scEiaD_all_anndata.h5ad", "All (~2.5 GB)")))),
fluidRow(column(width = 8, offset = 1, tags$li(tags$a(href="http://hpc.nih.gov/~mcgaugheyd/scEiaD/2020_01_03/scEiaD_all_anndata.h5ad", "All (~2.7 GB)")))),
fluidRow(column(width = 8, offset = 1, h2("Diff Testing Results"))),
fluidRow(column(width = 8, offset = 1, tags$li(tags$a(href="http://hpc.nih.gov/~mcgaugheyd/scEiaD/2020_12_31/pseudoBulk_diff_results.tsv.gz", "All PseudoBulk Results (~4.5GB)")))),
fluidRow(column(width = 8, offset = 1, tags$li(tags$a(href="http://hpc.nih.gov/~mcgaugheyd/scEiaD/2020_12_31/pseudoBulkTable_CellTypeagainstRemaining.tsv.gz", "CellType (Predict) against Remaining")))),
fluidRow(column(width = 8, offset = 1, tags$li(tags$a(href="http://hpc.nih.gov/~mcgaugheyd/scEiaD/2020_12_31/pseudoBulkTable_CellType(Predict)againstRemaining.tsv.gz", "CellType against Remaining")))),
fluidRow(column(width = 8, offset = 1, tags$li(tags$a(href="http://hpc.nih.gov/~mcgaugheyd/scEiaD/2020_12_31/pseudoBulkTable_ClusteragainstRemaining.tsv.gz", "Cluster against Remaining")))),
fluidRow(column(width = 8, offset = 1, tags$li(tags$a(href="http://hpc.nih.gov/~mcgaugheyd/scEiaD/2020_12_31/pseudoBulkTable_OrganismagainstOrganismwithinCellType(Predict).tsv.gz", "Organism against Organism within CellType (Predict)")))),
fluidRow(column(width = 8, offset = 1, tags$li(tags$a(href="http://hpc.nih.gov/~mcgaugheyd/scEiaD/2020_12_31/pseudoBulkTable_OrganismagainstOrganismwithinCellType.tsv.gz", "Organism against Organism within CellType")))),
fluidRow(column(width = 8, offset = 1, tags$li(tags$a(href="http://hpc.nih.gov/~mcgaugheyd/scEiaD/2020_12_31/pseudoBulkTable_OrganismagainstOrganismwithinCluster.tsv.gz", "Organism against Organism within Cluster")))),

fluidRow(column(width = 8, offset = 1, tags$li(tags$a(href="http://hpc.nih.gov/~mcgaugheyd/scEiaD/2020_12_31/pseudoBulkTable_PairwiseCellTypeagainstCellType.tsv.gz", "Pairwise CellType (Predict) against CellType (Predict)")))),
fluidRow(column(width = 8, offset = 1, tags$li(tags$a(href="http://hpc.nih.gov/~mcgaugheyd/scEiaD/2020_12_31/pseudoBulkTable_PairwiseCellType(Predict)againstCellType(Predict).tsv.gz", "Pairwise CellType against CellType")))),
fluidRow(column(width = 8, offset = 1, tags$li(tags$a(href="http://hpc.nih.gov/~mcgaugheyd/scEiaD/2020_12_31/pseudoBulkTable_PairwiseClusteragainstCluster.tsv.gz", "Pairwise Cluster against Cluster (~1.6 GB)")))),
fluidRow(column(width = 8, offset = 1, h2("PseudoBulk Matrices"))),
fluidRow(column(width = 8, offset = 1, tags$li(tags$a(href="http://hpc.nih.gov/~mcgaugheyd/scEiaD/2020_12_31/pseudoBulk_celltype.tsv.gz", "Counts summed across CellType and batch")))),
fluidRow(column(width = 8, offset = 1, tags$li(tags$a(href="http://hpc.nih.gov/~mcgaugheyd/scEiaD/2020_12_31/pseudoBulk_celltypePredict.tsv.gz", "Counts summed across CellType (predicted) and batch")))),
fluidRow(column(width = 8, offset = 1, tags$li(tags$a(href="http://hpc.nih.gov/~mcgaugheyd/scEiaD/2020_12_31/pseudoBulk_cluster.tsv.gz", "Counts summed across Cluster and batch")))),

fluidRow(column(width = 8, offset = 1, tags$li(tags$a(href="http://hpc.nih.gov/~mcgaugheyd/scEiaD/2020_01_03/wilcox_diff_results.tsv.gz", "All Diff Results (~1.1GB)")))),
fluidRow(column(width = 8, offset = 1, tags$li(tags$a(href="http://hpc.nih.gov/~mcgaugheyd/scEiaD/2020_01_03/wilcox_diff_resultsCellType.tsv.gz", "CellType (Predict) against CellType testing")))),
fluidRow(column(width = 8, offset = 1, tags$li(tags$a(href="http://hpc.nih.gov/~mcgaugheyd/scEiaD/2020_01_03/wilcox_diff_resultsCellType(Predict).tsv.gz", "CellType against CellType (Predict)")))),
fluidRow(column(width = 8, offset = 1, tags$li(tags$a(href="http://hpc.nih.gov/~mcgaugheyd/scEiaD/2020_01_03/wilcox_diff_resultsCluster.tsv.gz", "Cluster against Cluster")))),
fluidRow(column(width = 8, offset = 1, h2("Metadata"))),
fluidRow(column(width = 8, offset = 1, tags$li(tags$a(href="http://hpc.nih.gov/~mcgaugheyd/scEiaD/2020_12_31/metadata_filter.tsv.gz", "Cell Metadata")))),
fluidRow(column(width = 8, offset = 1, tags$li(tags$a(href="http://hpc.nih.gov/~mcgaugheyd/scEiaD/2020_01_03/metadata_filter.tsv.gz", "Cell Metadata")))),
fluidRow(column(width = 8, offset = 1, h2("Counts"))),
fluidRow(column(width = 8, offset = 1, tags$li(tags$a(href="http://hpc.nih.gov/~mcgaugheyd/scEiaD/2020_12_31/counts.Rdata", "Kallisto counts, R sparse matrix (~1.9 GB)")))),
fluidRow(column(width = 8, offset = 1, tags$li(tags$a(href="http://hpc.nih.gov/~mcgaugheyd/scEiaD/2020_12_31/cpm.Rdata", "Kallisto counts, cpm scaled, R sparse matrix (~1.9 GB)")))),
fluidRow(column(width = 8, offset = 1, tags$li(tags$a(href="http://hpc.nih.gov/~mcgaugheyd/scEiaD/2020_12_31/counts_unfiltered.Rdata", "Kallisto counts, no filtering, R sparse matrix (~1.9 GB)")))),
fluidRow(column(width = 8, offset = 1, tags$li(tags$a(href="http://hpc.nih.gov/~mcgaugheyd/scEiaD/2020_01_03/counts.Rdata", "Kallisto counts, R sparse matrix (~1.4 GB)")))),
fluidRow(column(width = 8, offset = 1, tags$li(tags$a(href="http://hpc.nih.gov/~mcgaugheyd/scEiaD/2020_01_03/cpm.Rdata", "Kallisto counts, cpm scaled, R sparse matrix (~1.4 GB)")))),
fluidRow(column(width = 8, offset = 1, tags$li(tags$a(href="http://hpc.nih.gov/~mcgaugheyd/scEiaD/2020_01_03/counts_unfiltered.Rdata", "Kallisto counts, no filtering, R sparse matrix (~1.4 GB)")))),
br(),br(),br(),br(),br(),br(),br(),br(),br(),br(),br(),br(),br(),br(),br(),br(),br(),br(),
fluidRow(includeHTML("www/footer.html"))
),

navbarMenu('Info', # Info ------
tabPanel('Overview', # Overview ------
fluidPage(
fluidRow(column(width = 8, offset = 1, h1('plae v0.50'))),
fluidRow(column(width = 8, offset = 1, h1('plae v0.51'))),
br(),
fluidRow(column(width = 8, offset = 1, h2(HTML("<b>PL</b>atform for <b>A</b>nalysis of sc<b>E</b>iad")))),
fluidRow(column(width = 8, offset = 1,
Expand Down

0 comments on commit 1525621

Please sign in to comment.