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refactor: remove global data_requirements #3798

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merged 8 commits into from
May 23, 2024

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@njzjz njzjz commented May 20, 2024

Fix #3522. Fix #3540.

Summary by CodeRabbit

  • New Features

    • Introduced a new property input_requirement across various models to streamline data requirements handling.
    • Added a new property label_requirement for loss classes to specify data label requirements.
  • Bug Fixes

    • Refactored and removed outdated data requirement handling methods to improve data processing efficiency.
  • Tests

    • Added new test cases to validate the input_requirement and label_requirement properties.
    • Updated existing tests to align with the new data requirements handling approach.

njzjz added 5 commits May 20, 2024 18:23
Signed-off-by: Jinzhe Zeng <[email protected]>
Signed-off-by: Jinzhe Zeng <[email protected]>
Signed-off-by: Jinzhe Zeng <[email protected]>
Signed-off-by: Jinzhe Zeng <[email protected]>
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coderabbitai bot commented May 20, 2024

Walkthrough

Walkthrough

The recent changes refactor the handling of data requirements in the deepmd library to eliminate the use of global variables. This involves removing the data_requirement global variable, introducing DataRequirementItem, and adding properties like input_requirement and label_requirement to manage data requirements within classes. This refactor aims to enhance modularity and maintainability by encapsulating data requirements within relevant classes.

Changes

Files/Modules Change Summary
source/tests/pt/model/test_model.py Removed data_requirement import, added dp_ds.add_data_requirements(dp_model.input_requirement), and removed data.add_dict(data_requirement).
deepmd/utils/data_system.py Removed data_requirement import, added DataRequirementItem import, modified add_dict method, added add_data_requirements method.
deepmd/tf/common.py Removed data_requirement global variable and add_data_requirement function.
deepmd/tf/descriptor/descriptor.py Added DataRequirementItem import, introduced input_requirement property.
deepmd/tf/descriptor/se_a_ebd.py Removed add_data_requirement import, added DataRequirementItem import, refactored data requirement handling in __init__ and added input_requirement property.
deepmd/tf/descriptor/se_a_ef.py Removed add_data_requirement import, added DataRequirementItem import, refactored data requirement handling in __init__ and added input_requirement property.
deepmd/tf/entrypoints/train.py Updated _do_work function to add data requirements to training and validation data objects.
deepmd/tf/fit/dos.py, deepmd/tf/fit/ener.py Removed add_data_requirement calls, introduced input_requirement property.
deepmd/tf/fit/fitting.py Added DataRequirementItem import, introduced input_requirement property.
deepmd/tf/loss/dos.py, deepmd/tf/loss/ener.py, deepmd/tf/loss/loss.py, deepmd/tf/loss/tensor.py Removed add_data_requirement calls, introduced label_requirement property.
deepmd/tf/model/frozen.py, deepmd/tf/model/linear.py, deepmd/tf/model/model.py, deepmd/tf/model/pairtab.py, deepmd/tf/model/pairwise_dprc.py Added DataRequirementItem import, introduced input_requirement property.
deepmd/tf/train/trainer.py Removed data_requirement import, added DataRequirementItem import, refactored _build_network method, added data_requirements property.
source/tests/tf/test_data_modifier.py, source/tests/tf/test_data_modifier_shuffle.py Replaced data_requirement with model.data_requirements.
deepmd/utils/data.py Added __eq__ and __repr__ methods to DataRequirementItem.
source/tests/tf/test_loss_gf.py, source/tests/tf/test_model_se_a.py, source/tests/tf/test_model_se_a_aparam.py, source/tests/tf/test_model_se_a_fparam.py, source/tests/tf/test_pairwise_dprc.py Added tests for DataRequirementItem and input requirements.

Assessment against linked issues

Objective Addressed Explanation
Refactor data_requirement to not be a global variable (#3522)
Remove line when data_requirement is not a global variable (#3540)

Overall, the changes effectively address the objectives outlined in the linked issues by refactoring the handling of data requirements to eliminate global variables and improve encapsulation within the relevant classes.


Recent Review Details

Configuration used: CodeRabbit UI
Review profile: CHILL

Commits Files that changed from the base of the PR and between 15db5df and 126295b.
Files selected for processing (6)
  • deepmd/utils/data.py (1 hunks)
  • source/tests/tf/test_loss_gf.py (2 hunks)
  • source/tests/tf/test_model_se_a.py (1 hunks)
  • source/tests/tf/test_model_se_a_aparam.py (2 hunks)
  • source/tests/tf/test_model_se_a_fparam.py (2 hunks)
  • source/tests/tf/test_pairwise_dprc.py (2 hunks)
Files skipped from review due to trivial changes (1)
  • source/tests/tf/test_pairwise_dprc.py
Additional comments not posted (8)
source/tests/tf/test_loss_gf.py (2)

8-10: LGTM! The import of DataRequirementItem aligns with the refactoring to handle data requirements locally.


32-86: Excellent addition of test_label_requirements. This test method effectively checks the correctness of the label_requirement property, ensuring it meets the new data handling requirements.

source/tests/tf/test_model_se_a_aparam.py (2)

19-21: LGTM! The import of DataRequirementItem is necessary for the new data requirement handling.


172-176: Excellent addition of a test to verify the input_requirement for aparam. This ensures that the model's data requirements are correctly implemented and tested.

source/tests/tf/test_model_se_a_fparam.py (2)

19-21: LGTM! The import of DataRequirementItem is necessary for the new data requirement handling.


173-180: Excellent addition of a test to verify the input_requirement for fparam. This ensures that the model's data requirements are correctly implemented and tested.

source/tests/tf/test_model_se_a.py (1)

268-270: Good addition of a test to verify the input_requirement for the model. This ensures that the model's data requirements are correctly implemented and tested, even if it expects no specific requirements.

deepmd/utils/data.py (1)

796-797: Review the representation method __repr__.

The __repr__ method provides a clear and concise string representation of the object, which is useful for debugging and logging.


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Actionable comments posted: 3

Outside diff range and nitpick comments (2)
deepmd/tf/model/pairwise_dprc.py (1)

428-435: Well encapsulated data requirement property.

Consider enhancing the docstring to explain what "aparam" represents and why it's necessary for this model, to improve code readability and maintainability.

deepmd/tf/fit/ener.py (1)

936-952: The new input_requirement property effectively encapsulates the data requirements for the model, replacing global variable usage with a more modular approach.

Consider adding documentation or examples on how to use the new input_requirement property effectively in the context of the entire system, ensuring that developers understand the changes and how to integrate them into their workflows.

deepmd/utils/data_system.py Show resolved Hide resolved
deepmd/tf/descriptor/se_a_ebd.py Show resolved Hide resolved
deepmd/tf/fit/dos.py Show resolved Hide resolved
@njzjz njzjz marked this pull request as draft May 20, 2024 22:52
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codecov bot commented May 20, 2024

Codecov Report

Attention: Patch coverage is 75.53957% with 34 lines in your changes missing coverage. Please review.

Project coverage is 82.56%. Comparing base (81b5949) to head (126295b).
Report is 140 commits behind head on devel.

Files Patch % Lines
deepmd/tf/model/frozen.py 27.27% 8 Missing ⚠️
deepmd/tf/fit/dos.py 33.33% 6 Missing ⚠️
deepmd/tf/loss/ener.py 80.64% 6 Missing ⚠️
deepmd/tf/descriptor/se_a_ebd.py 42.85% 4 Missing ⚠️
deepmd/tf/loss/dos.py 50.00% 4 Missing ⚠️
deepmd/tf/descriptor/se_a_ef.py 50.00% 3 Missing ⚠️
deepmd/tf/model/linear.py 80.00% 1 Missing ⚠️
deepmd/tf/model/pairtab.py 75.00% 1 Missing ⚠️
deepmd/utils/data.py 83.33% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##            devel    #3798      +/-   ##
==========================================
- Coverage   82.58%   82.56%   -0.03%     
==========================================
  Files         515      515              
  Lines       48806    48899      +93     
  Branches     2982     2983       +1     
==========================================
+ Hits        40308    40373      +65     
- Misses       7587     7615      +28     
  Partials      911      911              

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

njzjz added 2 commits May 20, 2024 19:01
Signed-off-by: Jinzhe Zeng <[email protected]>
Signed-off-by: Jinzhe Zeng <[email protected]>
@njzjz njzjz marked this pull request as ready for review May 21, 2024 00:37
@njzjz njzjz requested review from wanghan-iapcm and iProzd May 21, 2024 00:38
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please add UT for the data requirement of each model type.

Signed-off-by: Jinzhe Zeng <[email protected]>
@njzjz njzjz requested a review from wanghan-iapcm May 21, 2024 22:53
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Actionable comments posted: 1

deepmd/utils/data.py Show resolved Hide resolved
@wanghan-iapcm wanghan-iapcm added this pull request to the merge queue May 22, 2024
@github-merge-queue github-merge-queue bot removed this pull request from the merge queue due to failed status checks May 22, 2024
@iProzd iProzd added this pull request to the merge queue May 23, 2024
@github-merge-queue github-merge-queue bot removed this pull request from the merge queue due to failed status checks May 23, 2024
@iProzd iProzd added this pull request to the merge queue May 23, 2024
Merged via the queue into deepmodeling:devel with commit 02e4ce9 May 23, 2024
60 checks passed
mtaillefumier pushed a commit to mtaillefumier/deepmd-kit that referenced this pull request Sep 18, 2024
Fix deepmodeling#3522. Fix deepmodeling#3540.

<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->
## Summary by CodeRabbit

- **New Features**
- Introduced a new property `input_requirement` across various models to
streamline data requirements handling.
- Added a new property `label_requirement` for loss classes to specify
data label requirements.

- **Bug Fixes**
- Refactored and removed outdated data requirement handling methods to
improve data processing efficiency.

- **Tests**
- Added new test cases to validate the `input_requirement` and
`label_requirement` properties.
- Updated existing tests to align with the new data requirements
handling approach.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->

---------

Signed-off-by: Jinzhe Zeng <[email protected]>
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