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tight_layout.get_renderer() was removed starting from matplotlib 3.6 so plotHeatmap doesn't plot with matplotlib 3.6 installed.
(base) [etekoglu@linuxsrv006 manualqc]$ plotHeatmap -m neg_investigation.mat.gz -o neg_investigation.pdf \ > --colorList "white,#043565" "white,#043565" "white,red" "white,red" "white,red" \ > --missingDataColor "white" \ > --samplesLabel "1" "2" "3" "4" "5" \ > --regionsLabel "R1" "R2" "R3" "R4" \ > --sortUsingSamples 1 \ > --heatmapHeight 15 \ > --heatmapWidth 5 \ > --zMin 0 0 0 0 0 --zMax 3 3 1.5 1.5 100 \ > --yMin -0.5 -0.5 0 0 0 --yMax 3 3 1.5 1.5 150 Samples used for ordering within each group: [0] Traceback (most recent call last): File "/home/etekoglu/miniconda3/bin/plotHeatmap", line 12, in <module> main(args) File "/home/etekoglu/miniconda3/lib/python3.8/site-packages/deeptools/plotHeatmap.py", line 874, in main plotMatrix(hm, File "/home/etekoglu/miniconda3/lib/python3.8/site-packages/deeptools/plotHeatmap.py", line 587, in plotMatrix renderer = tl.get_renderer(fig) AttributeError: module 'matplotlib.tight_layout' has no attribute 'get_renderer'
Downgrading back to matplotlib 3.5.3 fixes the issue.
My versions are:
The text was updated successfully, but these errors were encountered:
fixes #1172
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tight_layout.get_renderer() was removed starting from matplotlib 3.6 so plotHeatmap doesn't plot with matplotlib 3.6 installed.
Downgrading back to matplotlib 3.5.3 fixes the issue.
My versions are:
The text was updated successfully, but these errors were encountered: