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@dermatologist
dermatologist committed Apr 28, 2021
2 parents 771f489 + fa2c714 commit b9a4684
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3 changes: 3 additions & 0 deletions .gitignore
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build/
.gradle

# docs
*.zip

# Eclipse Project Files #

.classpath
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## Multimodule application for spring-boot
From : https://github.com/spring-guides/gs-multi-module
# Clinical Knowledgebase Library - ckblib
<pre>
_________ ____ __.__________ __
\_ ___ \| |/ _|\______ \ \ \
______ / \ \/| < | | _/ ______ \ \
/_____/ \ \___| | \ | | \ /_____/ / /
\______ /____|__ \ |______ / /_/
\/ \/ \/
</pre>
![omopfhirmap](https://forthebadge.com/images/badges/made-with-java.svg)
![GitHub tag (latest by date)](https://img.shields.io/github/v/tag/E-Health/omopfhirmap)

[![ckblib](https://raw.github.com/dermatologist/ckblib/develop/notes/dermml.jpg)](https://nuchange.ca)

## About

Providing clinical decision support requires some formal way of representing clinical knowledge and complex algorithms for sophisticated inference. ckblib consists of three modules.
* The 'library' module wraps the NCBI's E-Utils API to harvest published article abstracts.
* The 'qtakes' module provides a programmable interface to my quick-ctakes or the quarkus based apache ctakes, a fast clinical text annotation engine.
* Finally, the graph module provides the Neo4J models, repositories and services for abstracting as a knowledge graph.

## How to use

* [Read how to install mvn packages from GitHub](https://docs.github.com/en/packages/guides/configuring-apache-maven-for-use-with-github-packages#installing-a-package)
* Include dependencies in pom.xml

```
<dependency>
<groupId>com.canehealth.ckblib</groupId>
<artifactId>library</artifactId>
<version>${latest-version-from-releases-tab}</version>
</dependency>
<dependency>
<groupId>com.canehealth.ckblib</groupId>
<artifactId>qtakes</artifactId>
<version>${latest-version-from-releases-tab}</version>
</dependency>
<dependency>
<groupId>com.canehealth.ckblib</groupId>
<artifactId>graph</artifactId>
<version>${latest-version-from-releases-tab}</version>
</dependency>
```
* Read [javadoc](https://dermatologist.github.io/ckblib/index.html). Documentation is WIP.
* Check the application module for an example end-to-end use.

## Author

* [Bell Eapen](https://nuchange.ca) | [contact](https://nuchange.ca/contact) | [![Twitter Follow](https://img.shields.io/twitter/follow/beapen?style=social)](https://twitter.com/beapen)

## Contributors
* PR welcome. Please see CONTRIBUTING.md for details.
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</parent>
<groupId>com.canehealth.ckblib</groupId>
<artifactId>ckblib-application</artifactId>
<version>0.11.0</version>
<version>0.12.0</version>
<name>ckblib-application</name>
<description>Demo project for Spring Boot</description>
<properties>
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<version>${lombok.version}</version>
<scope>provided</scope>
</dependency>

<!-- https://stackoverflow.com/questions/62006284/noclassdeffounderror-org-w3c-dom-ls-documentls-issue-occurring-only-on-deploy -->
<dependency>
<groupId>xerces</groupId>
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<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-maven-plugin</artifactId>
</plugin>
<!-- javadocs -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-site-plugin</artifactId>
<version>3.9.1</version>
</plugin>
</plugins>
</build>

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#!/bin/bash
cp -r target/site/apidocs ./docs
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<!DOCTYPE HTML>
<!-- NewPage -->
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<title>All Classes (cklib-core 0.11.0 API)</title>
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