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Dubious CircSkipJunctions output #47

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CDieterich opened this issue Jan 11, 2018 · 3 comments
Closed

Dubious CircSkipJunctions output #47

CDieterich opened this issue Jan 11, 2018 · 3 comments
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@tjakobi
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bug
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DCC version 0.4.5

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@CDieterich
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I have noticed some splice junction output that does not make any sense (i.e. no supporting reads)

in /prj/circRNA_ENCODE3/workflow/DCC_CD_07_2017/CircSkipJunctions
I found
1 26255171 26255865 0 0 0 0 0 00 0 0 0 0 0 0 1:26244319-26257596:0 00 0 0

@tjakobi tjakobi added the bug label Jan 11, 2018
@tjakobi tjakobi added this to the DCC version 0.4.5 milestone Jan 11, 2018
@tjakobi
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tjakobi commented Jan 15, 2018

I could trace back the error to the temporary count files created by DCC.
I am now rerunning the same project to generate those temporary files again for further analysis.

@CDieterich
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Did you push a fix for this problem, too ?

@tjakobi
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tjakobi commented Jan 16, 2018

I need to run tests to make sure everything is working now. Code will be pushed afterwards.

tjakobi added a commit that referenced this issue Jan 16, 2018
@tjakobi
Proposed fix for issue #47
2d38e7a
@tjakobi tjakobi mentioned this issue Jan 17, 2018
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@tjakobi tjakobi closed this as completed Jan 17, 2018
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