packages 'smfishHmrf', 'graphcoloring' are not yet installed

R CMD check found ERRORs

package 'limma' is not yet installed

Test failures

Process completed with exit code 1.

package 'limma' is not yet installed

Test failures

package 'limma' is not yet installed

Test failures

Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.

Dependence on R version '4.4.1' not with patchlevel 0

'::' or ':::' imports not declared from:

Packages unavailable to check Rd xrefs: 'limma', 'ClusterR', 'ComplexHeatmap', 'clustree', 'multinet', 'MAST', 'scran', 'jackstraw', 'rhdf5', 'harmony', 'RcppML', 'FactoMineR', 'Rtsne'

Undocumented S4 methods:

Undocumented arguments in Rd file 'createGiottoVisiumHDObject.Rd'