Giotto v4.2.0 #1094
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Giotto v4.2.0 #1094
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- area is also added as a default calculation. This is pretty fast so there's not much loss here.
- add descriptive message about which expression info you are using to calc expression stats. - should make clearer that you can calc stats on other expression information. normalized is just the default, not what you need in order to use the function.( - fix `return_gobject = FALSE` outputs when not all stats options are calculated.
fix license badge
Giotto 4.2.0
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Breaking Changes
createGiottoCosMxObject()that better reflect NanoString provided outputs.doMesmerSegmentation(),doCellposeSegmentation()doStardistSegmentation()Bug fixes
importCosMx()fov shifts file detectionimportCosMx()callSpdep()should also automatically convert Matrix classes tolistwEnhancements
statsparam inaddStatistics()to control which statistics are calculated."area"calculation added as anaddStatistics()statsselectionadjustGiottoMatrix()now outputs aMatrixstructure instead of a basematrixChanges
adjustGiottoMatrix()update_slotparam deprecated in favor ofname.