New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Feat: new (post-filtering) composable data processing and pipelining #1110

Merged

jiajic merged 2 commits into drieslab:suite_dev from jiajic:process_data

Mar 1, 2025

Member

jiajic commented Feb 28, 2025

Depends on processData() and svkey currently in {GiottoClass} 0.4.7 @norm_gen branch #239.

Generate method specific normParam(), scaleParam(), and adjustParam() classes.
Use them with processData() and an exprObj or matrix type
Use processExpression() when working with the giotto object level.
onload registration of additional matrix classes and associated methods when present in user env
added documentation for each processing operation type supported.

jiajic added 2 commits

February 27, 2025 20:12


          WIP - all done except limma

ec0e402


          feat: limma via processData() and docs

be6c343

jiajic merged commit a84caa3 into drieslab:suite_dev

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet