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Incorrect output when ALT is a multi-valued list #96

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rhdolin opened this issue Feb 21, 2022 · 0 comments · Fixed by #97
Closed

Incorrect output when ALT is a multi-valued list #96

rhdolin opened this issue Feb 21, 2022 · 0 comments · Fixed by #97

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@rhdolin
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rhdolin commented Feb 21, 2022

The following VCF record is only returning a single FHIR variant, but should result in two FHIR variants, each heterozygous (G>A, G>T), per this picture from the manual:

image

1 879676 . G A,T . . NS=1;AN=2;AC=2;CGA_XR=dbsnp.116|rs6605067;CGA_FI=148398|NM_152486.2|SAMD11|UTR3|UNKNOWN-INC&26155|NM_015658.3|NOC2L|UTR3|UNKNOWN-INC GT:PS:FT:GQ:HQ:EHQ:CGA_CEHQ:GL:CGA_CEGL:DP:AD:CGA_RDP 1/2:.:PASS:128:128,797:128,797:39,48:-797,-128,0:-48,-39,0:60:20,40:0
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@rhdolin