First pass working version

eo2cube · Apr 27, 2018 · 7486f8e · 7486f8e
1 parent fbc9df3
commit 7486f8e
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Showing 8 changed files with 908 additions and 978 deletions.
diff --git a/.gitignore b/.gitignore
@@ -2,4 +2,8 @@ data
 notebooks/.ipynb_checkpoints/
 notebooks/.datacube.conf
 notebooks/.local/
+notebooks/.cache/
+notebooks/.ipython/
+notebooks/.jupyter/
+notebooks/.python_history
 *.pyc
diff --git a/Dockerfile b/Dockerfile
@@ -0,0 +1,6 @@
+FROM opendatacube/datacube-jupyter:latest
+
+# Get more dependencies
+RUN pip3 install \
+    scikit-image \
+    && rm -rf $HOME/.cache/pip
diff --git a/Makefile b/Makefile
@@ -23,17 +23,14 @@ build:
 
 # Prepare the database
 initdb:
-
-	docker-compose exec opendatacube datacube -v system init
-	docker-compose exec opendatacube datacube product add /opt/odc/docs/config_samples/dataset_types/ls_usgs.yaml
-
+	docker-compose exec jupyter datacube -v system init
+	docker-compose exec jupyter datacube product add /opt/odc/docs/config_samples/dataset_types/ls_usgs.yaml
 
 # Index a dataset (just an example)
 index:
 	# Note that you need environment variables ODC_ACCESS_KEY and ODC_SECRET_KEY set.
 	# These need to be valid AWS keys. KEEP THEM SECRET, KEEP THEM SAFE!
-
-	docker-compose exec opendatacube bash -c \
+	docker-compose exec jupyter bash -c \
 		"cd /opt/odc/scripts && python3 ./autoIndex.py -p '/opt/odc/data/wrs2_asc_desc.zip' -e '146.30,146.83,-43.54,-43.20'"
 
 # This will load summary info into the DEA dashboard app

diff --git a/docker-compose.yml b/docker-compose.yml
@@ -9,7 +9,7 @@ services:
       - POSTGRES_USER=opendatacube
 
   jupyter:
-    image: opendatacube/datacube-jupyter
+    build: .
     environment:
       - DB_HOSTNAME=postgres
       - DB_USERNAME=opendatacube

diff --git a/notebooks/Datacube_Summary.ipynb b/notebooks/Datacube_Summary.ipynb
@@ -49,16 +49,19 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 3,
+   "execution_count": 5,
    "metadata": {},
    "outputs": [
     {
      "data": {
+      "text/html": [
+       "<div style=\"width:100%;\"><div style=\"position:relative;width:100%;height:0;padding-bottom:60%;\"><iframe 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style=\"position:absolute;width:100%;height:100%;left:0;top:0;border:none !important;\" allowfullscreen webkitallowfullscreen mozallowfullscreen></iframe></div></div>"
+      ],
       "text/plain": [
-       "<folium.features.PolyLine at 0x7fdb563f79b0>"
+       "<folium.folium.Map at 0x7f8c899bfa20>"
       ]
      },
-     "execution_count": 3,
+     "execution_count": 5,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -74,29 +77,7 @@
     "bounds = folium.PolyLine(rectangle, color='red')\n",
     "\n",
     "m.fit_bounds([[lat_min, lon_min],[lat_max, lon_max]])\n",
-    "bounds.add_to(m)"
-   ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": 4,
-   "metadata": {},
-   "outputs": [
-    {
-     "data": {
-      "text/html": [
-       "<div style=\"width:100%;\"><div style=\"position:relative;width:100%;height:0;padding-bottom:60%;\"><iframe 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style=\"position:absolute;width:100%;height:100%;left:0;top:0;border:none !important;\" allowfullscreen webkitallowfullscreen mozallowfullscreen></iframe></div></div>"
-      ],
-      "text/plain": [
-       "<folium.folium.Map at 0x7fdba6fec9e8>"
-      ]
-     },
-     "execution_count": 4,
-     "metadata": {},
-     "output_type": "execute_result"
-    }
-   ],
-   "source": [
+    "bounds.add_to(m)\n",
     "m"
    ]
   },
@@ -2481,7 +2462,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.5.2"
+   "version": "3.6.3"
   },
   "toc": {
    "toc_cell": false,