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Hello,
I've identified an issue with the handling of the
tr_bed
parameter that deviates from the standard practice seen in other parts of the codebase (for example, this line).When the
tr_bed
parameter is provided as an empty string in theparams-file.json
, it causes an error:This pull request addresses this issue by ensuring proper handling of the tr_bed parameter when it is an empty string.
Thank you for your great work and hope this helps!
Best regards,
Blaž