v2.5.0

Changed

• Reconciled workflow with wf-template v5.3.2
• Update Spectre to v0.3.2, which includes support for calling CNVs in hg19 data.
• ClinVar version in SnpEff container updated to version 20241103.
• Hidden additional options in MinKNOW for a simplified user experience.
• Improved performance of readStats process by updating to bamstats 0.19.1.

Added

• --spectre_args may be used to provide custom arguments to the Spectre process.

Fixed

• Collections of sorted XAM files eligible for merge will no longer be needlessly re-sorted before merge.
• Invalid method invocation when using QDNAseq with IGV output enabled.