Merge branch 'missing_umaps_CW-5478' into 'dev'

Fix expected UMAP filenames See merge request epi2melabs/workflows/wf-single-cell!249
epi2me-labs · Jan 3, 2025 · e60bf4b · e60bf4b
2 parents 94283a3 + 6a2224d
commit e60bf4b
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -4,6 +4,10 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## [v2.4.1]
+### Fixed
+- Missing UMAP plots.
+
 ## [v2.4.0]
 ### Changed
 - Output filenames to include sample alias.

diff --git a/bin/workflow_glue/report.py b/bin/workflow_glue/report.py
@@ -155,8 +155,8 @@ def _plot(data, title, hue):
 
             repl_tabs = Tabs()
 
-            gene_umap_files = sample_dir.glob('gene.expression.umap*.tsv')
-            transcript_umap_files = sample_dir.glob('transcript.expression.umap*.tsv')
+            gene_umap_files = sample_dir.glob('*gene_expression_umap*.tsv')
+            transcript_umap_files = sample_dir.glob('*transcript_expression_umap*.tsv')
 
             for i, (
                 gene_umap_file, transcript_umap_file

diff --git a/nextflow.config b/nextflow.config
@@ -71,7 +71,7 @@ manifest {
     description     = 'Identification of cell- and UMI barcodes from single-cell sequencing.'
     mainScript      = 'main.nf'
     nextflowVersion = '>=23.04.2'
-    version         = '2.4.0'
+    version         = '2.4.1'
 }
 
 epi2melabs {