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update REAMDE
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sreichl committed Dec 12, 2024
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Expand Up @@ -18,7 +18,7 @@ Get 80% of all standard (biomedical) data science analyses done semi-automated w
# 🧩 Modules
> _"Is it functional, multifunctional, durable, well-fitted, simple, easy to maintain, and thoroughly tested? Does it provide added value, and doesn't cause unnecessary harm? Can it be simpler? Is it an innovation?"_ - Patagonia Design Principles
**Modules** are Snakemake workflows, consisting of **Rules** for multi-step analyses, that are independent and self-contained. A `{module}` can be general-purpose (e.g., Unsupervised Analysis) or modality-specific (e.g., ATAC-seq processing). Currently, the following **nine modules** are available, ordered by their applicability from general to specific:
**Modules** are Snakemake workflows, consisting of **Rules** for multi-step analyses, that are **independent**, **single-purpose**, and sufficiently abstracted to be **compatible** with most up- and downstream analyses. A `{module}` can be general-purpose (e.g., Unsupervised Analysis) or modality-specific (e.g., ATAC-seq processing). Currently, the following **nine modules** are available, ordered by their applicability from general to specific:

| Module | Type (Data Modality) | DOI | Stars |
| :---: | :---: | :---: | :---: |
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