An R package for correlated mutation analysis using both codon and amino acid levels
CMA provides several methods for calculating correlated mutations analysis. Methods that are currently provided in this package are: OMES, MI, DCA.
If you use this package please cite:
Etai Jacob, Ron Unger and Amnon Horovitz (2015). Codon-level information improves predictions of inter-residue contacts in proteins by correlated mutation analysis. eLife 2015;10.7554/eLife.08932 http://dx.doi.org/10.7554/eLife.08932.
devtools::install_github("etaijacob/CMA")
This pacakge code was checked on Mac OS