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An R package for correlated mutation analysis using both codon and amino acid levels

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CMA

Correlated Mutation Analysis

An R package for correlated mutation analysis using both codon and amino acid levels

CMA provides several methods for calculating correlated mutations analysis. Methods that are currently provided in this package are: OMES, MI, DCA.

If you use this package please cite:

Etai Jacob, Ron Unger and Amnon Horovitz (2015). Codon-level information improves predictions of inter-residue contacts in proteins by correlated mutation analysis. eLife 2015;10.7554/eLife.08932 http://dx.doi.org/10.7554/eLife.08932.

To install:

devtools::install_github("etaijacob/CMA")

Notes

This pacakge code was checked on Mac OS

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An R package for correlated mutation analysis using both codon and amino acid levels

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