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1. GCE GCE Public

   GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis rate of the sequencing sample. The estimated result can be u…

   Roff 48 5

2. EndHiC EndHiC Public

   EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to assemble large contigs into chromosomal-level scaffolds.

   Perl 19 3

3. kmerfreq kmerfreq Public

   kmerfreq count K-mer (with size K) frequency from the input sequence data, typically sequencing reads data, and refe rence genome data is also applicable. Kmerferq output file can be used as input …

   C++ 17 5

4. bioinfo_versatiles bioinfo_versatiles Public

   a set of frequently used perl programs that faciliate bioinformatics analysis jobs, which may be very helpful especially for the new bioinformaticians

   Perl 8 3

5. DBG_assembly DBG_assembly Public

   Developed for assemble the genomes with second-generation sequencing data, especially using the Illumina short reads. It is comparable to SOAPdenovo, and approach to SOAPdenovo2 in some aspects.

   C++ 5

6. Probing_Meiotic_Recombination Probing_Meiotic_Recombination Public

   Developed at Biopic (PKU) in 2012-2013 for probing meiotic recombination and aneuploidy by analyzing the single cell sequencing data from sperm and oocytes, includes mapping the reads to the refere…

   C++ 3