feat: FIRE extract update

src/fire.rs

@@ -562,8 +562,7 @@ pub fn fire_to_bed9(fire_opts: &FireOptions, bam: &mut bam::Reader) -> Result<()
             .chain(rec.nuc.reference_ends.iter());
         let qual_iter = rec.msp.qual.iter().chain(rec.nuc.qual.iter());
         let n_msps = rec.msp.reference_starts.len();
-        let mut count = 0;
-        for ((start, end), qual) in start_iter.zip(end_iter).zip(qual_iter) {
+        for (count, ((start, end), qual)) in start_iter.zip(end_iter).zip(qual_iter).enumerate() {
             if let (Some(start), Some(end)) = (start, end) {
                 let fdr = if count < n_msps {
                     100.0 - *qual as f32 / 255.0 * 100.0
@@ -588,7 +587,6 @@ pub fn fire_to_bed9(fire_opts: &FireOptions, bam: &mut bam::Reader) -> Result<()
                 );
                 out_buffer.write_all(bed9.as_bytes())?;
             }
-            count += 1;
         }
     }
     Ok(())

src/footprint.rs

@@ -52,9 +52,7 @@ pub fn define_footprint(fiber: FiberseqData, bed_rec: CenterPosition, _modules:
     if fiber.target_name != bed_rec.chrom
         || fiber.record.reference_start() > bed_rec.position
         || fiber.record.reference_end() < bed_rec.position
-    {
-        return;
-    }
+    {}
 }
 
 pub fn start_finding_footprints(opts: &FootprintOptions) -> Result<(), anyhow::Error> {