v0.5.0
Chore
- clippy
- clippy
- clippy
- unused
- cli
- cli
- cli
- update ctcf definition
- prep for bump
- pyft bump
- hide m5c #54
- hide m5c #54
- extend docs #54
- cargo dist
New Features
- skip empty regions
- skip empty regions
- add a ddda to m6a converter
- switch to generic cpu
- switch to generic cpu
- add ont fire heuristic test data and cli improments
- add ont fire heuristic
- add ont fire heuristic
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- starting the book
- add options motif_span
- more input bam functions
- more input bam functions
- InputBam now can make a template for an output bam
- InputBam now can make a template for an output bam
- allow the complexity of the pipeup to be adjusted
- pileup is now useable
- pileup is now useable
- pileup is now useable
- add a pyft way to iterate over a bam file one read at a time.
- allow fire opts to be read from env vars.
- inital fibertools pileup is complete
- inital fibertools pileup is complete
- inital fibertools pileup is complete
Bug Fixes
- make footprint u16 number of modules consistent
- use bit flag filter
- use min ml score in pileup
- check for end of chrom
- missing final base in pileup region
- clean up cli interactions with pileup
- clean up cli interactions with pileup
- clean up cli interactions with pileup
- clean up cli interactions with pileup
- clean up cli interactions with pileup
- clean up cli interactions with pileup
- clean up cli interactions with pileup
- clean up cli interactions with pileup
- clean up cli interactions with pileup
- fix label on FIRE vs LINKER for decorator tracks
- keep footprint code
- skip sites with zero spanning reads
- skip sites with zero spanning reads
- pileup thread error
- pileup thread error
- add target names to pyft
- add target names to pyft
- add target names to pyft
- add new check to avoid a new failure on unaligned bams
- py-ft build
- py-ft build
Other
- removing unneeded nesting
- Major change to the cli and adding a filtering tools that works like samtools view -F
- why are the revio tests failing?
Refactor
- move some tests
- update for fibertools refactor
- move some complexity into utils
- move some complexity into utils
- move some complexity into utils
- move some complexity into utils
- move some complexity into utils
- move the running of subcommands into a submodule called subcommands
- move the running of subcommands into a submodule called subcommands
- Breakout subcommands opts into different files
- Make the inputbam function a utility and add a FiberFilter structure that can be used to filter the input bam and therefore the output
Commit Statistics
- 1 commit contributed to the release.
- 131 days passed between releases.
- 0 commits were understood as conventional.
- 1 unique issue was worked on: #50