remove plot_illumination_bias

bigfish/plot/plot_quality.py

@@ -95,53 +95,3 @@ def plot_sharpness(focus_measures, labels=None, title=None, framesize=(5, 5),
         plt.close()
 
     return
-
-
-def plot_illumination_surface(illumination_surface, r=0, framesize=(15, 15),
-                              titles=None, path_output=None, ext="png"):
-    """Subplot the yx plan of the dimensions of an illumination surface for
-    all channels.
-
-    Parameters
-    ----------
-    illumination_surface : np.ndarray, np.float
-        A 4-d tensor with shape (r, c, y, x) approximating the average
-        differential of illumination in our stack of images, for each channel
-        and each round.
-    r : int
-        Index of the round to keep.
-    framesize : tuple
-        Size of the frame used to plot with 'plt.figure(figsize=framesize)'.
-    titles : List[str]
-        Titles of the subplots (one per channel).
-    path_output : str
-        Path to save the image (without extension).
-    ext : str or List[str]
-        Extension used to save the plot. If it is a list of strings, the plot
-        will be saved several times.
-
-    Returns
-    -------
-
-    """
-    # TODO add title in the plot and remove axes
-    # TODO add parameter for vmin and vmax
-    # check tensor
-    stack.check_array(illumination_surface,
-                      ndim=4,
-                      dtype=[np.float32, np.float64])
-
-    # get the number of channels
-    nb_channels = illumination_surface.shape[1]
-
-    # plot
-    fig, ax = plt.subplots(1, nb_channels, sharex='col', figsize=framesize)
-    for i in range(nb_channels):
-        ax[i].imshow(illumination_surface[r, i, :, :])
-        if titles is not None:
-            ax[i].set_title(titles[i], fontweight="bold", fontsize=15)
-    plt.tight_layout()
-    save_plot(path_output, ext)
-    plt.show()
-
-    return