fix bug to build sphinx

.readthedocs.yaml

@@ -0,0 +1,23 @@
+# .readthedocs.yaml
+# Read the Docs configuration file
+# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details
+
+# Required
+version: 2
+
+# Build documentation in the docs/ directory with Sphinx
+sphinx:
+   builder: html
+   configuration: docs/conf.py
+
+# Optionally build your docs in additional formats such as PDF
+formats:
+   - pdf
+
+# Optionally set the version of Python and requirements required to build your docs
+python:
+   version: 3.6
+   install:
+   - requirements: requirements_docs.txt
+   - method: pip
+     path: .

docs/source/plot/plot_coordinate.rst

@@ -7,6 +7,4 @@ Single-cell plot
 
 Function to visualize coordinate representation of individual cells:
 
-* :func:`bigfish.plot.plot_cell`
-
 .. autofunction:: plot_cell

docs/source/plot/plot_image.rst

@@ -25,6 +25,4 @@ Plot quality measure of an image
 
 Plot focus measures for a 3D image:
 
-* :func:`bigfish.plot.plot_sharpness`
-
 .. autofunction:: plot_sharpness

docs/source/segmentation/nucleus.rst

@@ -34,6 +34,4 @@ Remove segmented nuclei
 Remove segmented nucleus instances to perform a new segmentation on the
 residual image:
 
-* :func:`bigfish.segmentation.remove_segmented_nuc`
-
 .. autofunction:: remove_segmented_nuc

requirements_docs.txt

@@ -1,10 +1,3 @@
-numpy == 1.16.0
-scikit-learn == 0.20.2
-scikit-image == 0.14.2
-scipy == 1.4.1
-matplotlib == 3.0.2
-pandas == 0.24.0
-mrc == 0.1.5
 sphinx == 3.3.1
 numpydoc == 1.1.0
 sphinx-rtd-theme == 0.5.0