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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 646 370

  2. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 311 80

  3. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 311 80

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 253 147

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 146 91

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 117 21

Repositories

Showing 10 of 184 repositories
  • finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    flatironinstitute/finufft’s past year of commit activity
    C++ 311 80 55 (3 issues need help) 8 Updated Jan 9, 2025
  • wasmlets Public
    flatironinstitute/wasmlets’s past year of commit activity
    TypeScript 0 BSD-3-Clause 0 1 0 Updated Jan 8, 2025
  • spack Public Forked from spack/spack

    A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

    flatironinstitute/spack’s past year of commit activity
    Python 2 2,352 0 16 Updated Jan 8, 2025
  • spreadkernel Public

    Small library that smears non-uniformly distributed points onto a uniform grid, via a user supplied spreading kernel. This project is supported by the Simons Foundation's Flatiron Institute.

    flatironinstitute/spreadkernel’s past year of commit activity
    C++ 0 0 0 0 Updated Jan 8, 2025
  • neurorse-workshops Public

    Built workshop materials for the NeuroRSE packages

    flatironinstitute/neurorse-workshops’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Jan 7, 2025
  • CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    flatironinstitute/CaImAn’s past year of commit activity
    Python 646 GPL-2.0 370 77 (1 issue needs help) 10 Updated Jan 7, 2025
  • jenkins-webserver-template Public

    Template repo to serve as recipient of jenkins documentation build pushes

    flatironinstitute/jenkins-webserver-template’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 7, 2025
  • ccn-software-jan-2025 Public

    Materials for CCN software workshop at Flatiron, Jan 2025

    flatironinstitute/ccn-software-jan-2025’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Jan 7, 2025
  • neuroRSE Public

    Website for CCN's neuroRSE group

    flatironinstitute/neuroRSE’s past year of commit activity
    CSS 1 MIT 0 0 0 Updated Jan 7, 2025
  • nifty-ls Public

    A fast Lomb-Scargle periodogram. It's nifty, and uses a NUFFT!

    flatironinstitute/nifty-ls’s past year of commit activity
    Python 36 Apache-2.0 2 4 0 Updated Jan 7, 2025

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